Table 5.
Total RNA-seq overview.
| Sample | Total reads | % of >= Q30 bases | Trimmed reads | Total mapped reads | % of total mapped reads | Unmapped reads | % of unmapped reads |
|---|---|---|---|---|---|---|---|
| Uninfected tree shrew liver (#1) | 117.38 | 94.87 | 115.39 | 100.37 | 86.99 | 15.02 | 13.01 |
| Uninfected tree shrew liver (#2) | 125.70 | 95.04 | 123.59 | 108.03 | 87.40 | 15.57 | 12.60 |
| Uninfected tree shrew liver (#3) | 92.43 | 94.74 | 90.28 | 82.01 | 90.84 | 8.27 | 9.16 |
| Uninfected tree shrew liver (#4) | 99.86 | 95.39 | 98.30 | 87.11 | 88.62 | 11.19 | 11.38 |
| HBV-C 1 dpi tree shrew liver (#1) | 106.45 | 95.33 | 104.75 | 92.07 | 87.90 | 12.68 | 12.10 |
| HBV-C 1 dpi tree shrew liver (#2) | 97.06 | 95.31 | 95.45 | 84.01 | 88.01 | 11.44 | 11.99 |
| HBV-C 3 dpi tree shrew liver (#1) | 99.51 | 95.51 | 97.87 | 85.30 | 87.15 | 12.57 | 12.85 |
| HBV-C 3 dpi tree shrew liver (#2) | 100.26 | 95.61 | 98.72 | 85.53 | 86.64 | 13.18 | 13.36 |
| HBV-A 21 dpi tree shrew liver (#1) | 94.93 | 95.57 | 93.48 | 80.42 | 86.02 | 13.07 | 13.98 |
| Uninfected tree shrew spleen (mix; #1, #2, and #4) | 91.34 | 95.43 | 89.69 | 79.00 | 88.09 | 10.69 | 11.91 |
| HBV-C 1 and 3 dpi tree shrew spleen (mix; 1 dpi [#1, #2], 3 dpi [#2]) | 88.74 | 95.55 | 87.09 | 78.24 | 89.83 | 8.85 | 10.17 |
| HBV-A 8 mpi tree shrew spleen (mix; #1, #2, and #3) | 93.64 | 95.56 | 91.72 | 82.19 | 89.62 | 9.52 | 10.38 |
Read values represent millions of reads.