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Variant detection accuracy in Sentieon DNASeq and GATK4: F1 scores.
| Dataset | Synthetic WGS, chr 20-22 | NA12878 |
|---|---|---|
| Sentieon vs. GATK4 | 0.99 | 0.997 w/ Realigner |
| 0.997 w/o Realigner | ||
| Truth sets | Golden VCF | Illumina Platinum variant calls |
| Sentieon vs. Truth set | 0.96 | 0.96 |
| GATK4 vs. Truth set | 0.95 | 0.96 |
