Antibodies |
|
|
Drp1 |
Abcam |
Ab184247 |
p44/42 MAPK (Erk 1/2) |
Cell Signaling Technology |
CST-9102; RRID: AB_330744 |
phospho-p44/42 MAPK (Erk 1/2) T202/Y204 |
Cell Signaling Technology |
CST-9101; RRID: AB_331646 |
HK2 (C64G5) |
Cell Signaling Technology |
CST-2867; RRID: AB_2232946 |
Hif1α |
Cell Signaling Technology |
CST-3716; RRID: AB_2116962 |
β-Tubulin (9F3) |
Cell Signaling Technology |
CST-2128; RRID: AB_823664 |
β-Actin (D6AB) |
Cell Signaling Technology |
CST-8457; RRID: AB_10950489 |
GAPDH (D16H11) |
Cell Signaling Technology |
CST-5174; RRID: AB_10622025 |
anti-Mitochondria antibody (clone 113–1, Cy3 conjugate) |
EMD Millipore |
MAB1273C3; RRID: AB_2631100 |
Biological Samples |
|
|
Patient-derived xenografts (PDX) |
Walters et al., 2013b |
N/A |
Chemicals |
|
|
Atglistatin |
Sigma |
SML1075 |
Glucose, D-[3-3H] |
Perkin-Elmer |
NET331C001MC |
Glucose, D-[14C (U)] |
Perkin-Elmer |
NEC042X250UC |
oligomycin |
Millipore |
495455 |
2-deoxyglucose |
Chem-Impex |
21916 |
BAM15 |
Cayman |
17811 |
Rotenone |
Sigma |
R8875 |
Antimycin A |
Sigma |
A8674 |
Phusion HF DNA Polymerase |
New England Biolabs |
M0530 |
EnVision FLEX Target Retrieval Solution |
Dako, Glostrup, Denmark |
GV80411–2 (Agilent) |
3,3′-diaminobenzidine tetrahydrochloride (DAB+) chromogen |
Dako, Glostrup, Denmark |
GV82511–2 (Agilent) |
Critical Commercial Assays |
|
|
CellTiter-Glo Luminescent Cell Viability assay |
Promega |
G7572 |
CyQUANT Cell Proliferation Assay |
ThermoFisher |
C7026 |
Mitochondrial Stress Test |
Seahorse Biosciences |
103015–100 |
Glycolysis Stress Test |
Seahorse Biosciences |
103020–100 |
Lactate-Glo Luminescent assay |
Promega |
J5021 |
Experimental Models: Cell Lines |
|
|
PDX 188t |
Walters et al., 2013b |
N/A |
PDX 395t |
Walters et al., 2013b |
N/A |
L3.6pL |
Bruns et al., 1999 |
Gift from Dr. Kim Kelly |
CFPac |
Moore et al., 2001 |
Gift from Dr. Kim Kelly |
109, 123, 128, 132, 143, 145, 253, 410, 650 (+ clones) |
This Paper |
N/A |
P.1, KP.1, KPD.1, P.2, KP.2, KPD.2 |
This Paper |
N/A |
Experimental Models: Organisms/Strains |
|
|
LSL-KRasG12D/+; TP53flox/flox
|
Jackson et al., 2005 |
Gift of Kwon Park |
Pdx1-Cre-ERTM |
Gidekel Friedlander et al., 2009 |
Jackson Laboratory |
Drp1flox/flox
|
Wakabayashi et al., 2009 |
N/A |
Oligonucleotides |
|
|
HK2 Forward: 5′-TGATCGCCTGCTTATTCACGG-3′ |
Shi et al., 2011 |
N/A |
HK2 Reverse: 5′-AACCGCCTAGAAATCTCCAGA-3′ |
Shi et al., 2011 |
N/A |
ActB Forward: 5′-TGACGTTGACATCCGTAAAG-3′ |
Yan et al., 2016 |
N/A |
ActB Reverse: 5′-GAGGAGCAATGATCTTGATCT-3′ |
Yan et al., 2016 |
N/A |
Ubc Forward: 5′-GCCCAGTGTTACCACCAAGA-3′ |
Yan et al., 2016 |
N/A |
Ubc Reverse: 5′-CCCATCACACCCAAGAACA-3′ |
Yan et al., 2016 |
N/A |
Recombinant DNA |
|
|
pLenti CMV TetR Blast |
Campeau et al., 2009 |
Addgene #17492 |
pSuperior-Retro-Puro-scramble |
Kashatus et al., 2015 |
N/A |
pSuperior-Retro-Puro-shDrp1 |
Kashatus et al., 2015 |
Addgene #99385 |
Software and Algorithms |
|
|
ImageScope Annotations tool |
Leica Biosystems |
https://www.leicabiosystems.com/digital-pathology/manage/aperio-imagescope/ |