CD8+ T resident memory cells are abundant in the CNS during long-term infection and maintain an effector phenotype. (A) Lymphocytes were purified from whole-brain single-cell suspensions of perfused mice at the indicated days postinfection and subjected to flow cytometric analysis. Black bars, total numbers of CD3+ CD8+ T cells; white bars, total numbers of CD3+ CD8+ CD103+ T cells. #, P < 0.05, Mann-Whitney U test for the proportion of CD3+ CD8+ CD103+ T cells to CD3+ CD8+ T cells (n = 5 to 15/group). (B) Lymphocytes were purified from perfused whole brains of mice infected for 7 or ≥90 days and immunostained for CD103. The percentage of CD103+ cells of the CD3+ CD8+ population is shown. (C) Lymphocytes were purified from perfused whole brains of mice infected for ≥90 days; the percentage of CD69+ cells among CD3+ CD8+ CD103+ T cells in the brains of uninfected or persistently infected NSE-CD46+ mice is shown. (D) Lymphocytes purified from whole-brain tissue of mock-infected mice (PBS), mice inoculated with inactivated virus (UV MV), or mice infected with replication-competent MV, collected at 90 dpi, and subjected to flow cytometric analysis. CD103+ CD3+ CD8+ cells are shown as a percentage of total CD3+ CD8+ T cells (n ≥ 6/group). The percentage of CD3+ CD8+ CD103+ (Trm) cells among CD3+ CD8+ T cells in brains of mice infected for ≥90 days (n = 5 to 8/group) is also shown. (E and F) Lymphocytes purified from perfused whole brains of mice infected for ≥90 days. (E) Percentages of IFN-γ+ CD3+ CD8+ CD103+ and CD3+ CD8+ CD103− cells (n = 8/group). (F) Percentages of granzyme B+ CD3+ CD8+ CD103+ and CD3+ CD8+ CD103− cells (n = 8/group). #, P < 0.05, Mann-Whitney U test. Data are representative of those from at least 2 independent experiments.