Table 2.
Structural comparison between MMF-bound hGAPDH and others based on the DALI server hits
Protein | Species | Ligand | PDB code (chain) | r.m.s.d. (Å) | No. of aligned | Identity (%) | Z-score |
---|---|---|---|---|---|---|---|
GAPDH | Homo sapiens | NAD+ | 4wnc (A) | 0.2 | 333 | 100 | 57.3 |
Escherichia coli O157:H7 | Apo | 5o0v (A) | 0.7 | 330 | 66 | 52.1 | |
Trypanosoma cruzi | BRZ | 1k3t (A) | 1.1 | 359 | 53 | 49.1 | |
Lactobacillus acidophilus | Apo | 5j9g (A) | 1.3 | 338 | 42 | 46.6 | |
Streptococcus agalactiae | NAD+, G3H | 5jya (D) | 1.3 | 343 | 45 | 46.1 | |
S. agalactiae | Apo | 5jyf (B) | 1.3 | 294 | 46 | 38.1 |
NAD+, nicotinamide-adenine-dinucleotide; BRZ, 6-(1,1-dimethylallyl)-2-(1-hydroxy-1-methylethyl)-2,3-dihydro-7h-furo[3,2-g]chromen-7-one; G3H, glyceraldehyde-3-phosphate.