TABLE 2.
Bacterial strains and plasmids
Strain or plasmid | Relevant characteristic(s)a | Source and/or reference |
---|---|---|
Strains | ||
A. baumannii | ||
ATCC 19606T | Clinical isolate, type strain, antibiotic susceptible | 67 |
ATCC 17978 | Clinical isolate, antibiotic susceptible | 39 |
ACICU | MDR clinical isolate, prototype of the international clonal lineage II | 68 |
AYE | MDR clinical isolate, prototype of the international clonal lineage I | 31 |
A. baylyi BD413 | Naturally transformable strain | 69, 70 |
A. dijkshoorniae 271 | Member of the ACB complex | Seifert collection (71) |
A. nosocomialis UKK_0361 | Member of the ACB complex | Seifert collection (22) |
A. pittii UKK_0145 | Member of the ACB complex | Seifert collection (22) |
A. seifertii HS A23-2 | Member of the ACB complex | Seifert collection (72) |
E. coli | ||
DH5α | λ− ϕ80dlacZΔM15 Δ(lacZYA-argF)U169 recA1 endA1 hsdR17(rK− mK−) supE44 thi-1 gyrA relA1 Nalr | 63 |
H1717 | fhuF::λplacMu aroB araD139 ΔlacU169 rpsL150 relA1 flbB5301 deoC1 ptsF25 rbsR Kmr | 44 |
Plasmids | ||
pBluescript-II KS | E. coli cloning vector (GenBank accession number X52327.1), Apr | 73 |
mini-CTX-lux | Integration-proficient Pseudomonas aeruginosa vector for chromosomal lux gene fusions, source of lux operon, Tcr | 30 |
pVRL1 | E. coli-Acinetobacter species shuttle cloning vector, source of ColE1-like and oriAb origins of replication, aacC1 and TA cassette, MCS, Gmr | 22 |
pVRL2lacZ | E. coli-Acinetobacter species shuttle plasmid for arabinose-regulated lacZ expression, source of lacZ reporter gene, Gmr | 22 |
pVRL2gfp | E. coli-Acinetobacter species shuttle plasmid for arabinose-regulated GFP expression, source of GFP reporter gene, Gmr | 22 |
pVRL1Z | pVRL1-derived vector carrying the ble gene, source of ble cassette, Zeor | 22 |
pMP220 | Broad-host range, low copy number promoter-probe vector based on the lacZ reporter gene, Tcr | 18 |
pMP220::PbasA | A. baumannii PbasA promoter cloned into pMP220, Tcr | 19 |
pBS::PbasA | A. baumannii PbasA promoter cloned into pBluescript-II KS (pBS), Apr | 19 |
pWH1277 | Full length pWH1277 ligated to pBluescript-II KS plasmid, Apr | This work |
pWH1277-Δ1 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ2 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ3 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ4 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ5 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ6 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ7 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ8 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ9 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ10 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pWH1277-Δ11 | Deletion derivative of pWH1277 cloned into pBluescript-II KS, Apr | This work |
pAb | E. coli-Acinetobacter species shuttle plasmid employed as scaffold vector for pLPV promoter-probe plasmid construction, Gmr | This work |
pAbΔlac | pAb plasmid carrying a deletion of CAP binding site, lac promoter (Plac) and the first 24 codons of lacZα, Gmr | This work |
pLPV1 | lux-based promoter-probe plasmid, Gmr | This work |
pLPV2 | lacZ-based promoter-probe plasmid, Gmr | This work |
pLPV3 | GFP-based promoter-probe plasmid, Gmr | This work |
pLPV1Z | pLPV1-derived vector carrying the ble cassette, Gmr Zeor | This work |
pLPV2Z | pLPV2-derived vector carrying the ble cassette, Gmr Zeor | This work |
pLPV3Z | pLPV3-derived vector carrying the ble cassette, Gmr Zeor | This work |
pLPV1Z::PuvrA | PuvrA promoter cloned in pLPV1Z, Gmr Zeor | This work |
pLPV2Z::PuvrA | PuvrA promoter cloned in pLPV2Z, Gmr Zeor | This work |
pLPV3Z::PuvrA | PuvrA promoter cloned in pLPV3Z, Gmr Zeor | This work |
pLPV1Z::PadhP | PadhP promoter cloned in pLPV1Z, Gmr Zeor | This work |
pLPV1Z::PyahK | PyahK promoter cloned in pLPV1Z, Gmr Zeor | This work |
pLPV1Z::PbasA | PbasA promoter cloned in pLPV1Z, Gmr Zeor | This work |
pLPV2Z::PbasA | PbasA promoter cloned in pLPV2Z, Gmr Zeor | This work |
pLPV3Z::PbasA | PbasA promoter cloned in pLPV3Z, Gmr Zeor | This work |
Nalr, nalidixic acid resistant; Kmr, kanamycin resistant; Apr, ampicillin resistant; Tcr tetracycline resistant; Gmr, gentamicin resistant; Zeor, zeocin resistant; ACB, Acinetobacter calcoaceticus-Acinetobacter baumannii.