TABLE 1.
Whole-genome sequencing analyses of 35 Salmonella enterica isolates from food animal and clinical sources
| Isolate | Serotype | Source | Yr of isolation | No. of sequence reads | N50 (bp) | No. of contigs | Genome length (bp) | No. of CDS | G+C content (%) | Accession no. |
|---|---|---|---|---|---|---|---|---|---|---|
| 67 | Newport | Cattle | 2002 | 5,019,561 | 25,424 | 485 | 4,486,820 | 4,678 | 52.15 | VCBN00000000 |
| 74 | Newport | Cattle | 2002 | 4,989,252 | 25,085 | 420 | 4,328,188 | 4,481 | 52.22 | VCBO00000000 |
| 76 | Newport | Chicken | 2001 | 4,926,523 | 32,358 | 343 | 4,349,537 | 4,475 | 52.15 | VCBP00000000 |
| 89 | Newport | Swine | 2001 | 4,977,554 | 26,443 | 407 | 4,620,558 | 4,755 | 52.18 | VCIK00000000 |
| 93 | Newport | Swine | 2002 | 5,027,143 | 32,187 | 320 | 4,403,717 | 4,586 | 52.10 | VCIL00000000 |
| 100 | Newport | Turkey | 2001 | 4,837,174 | 42,117 | 294 | 4,355,301 | 4,419 | 52.15 | VCIM00000000 |
| 111 | Heidelberg | Cattle | 2001 | 5,182,383 | 29,076 | 363 | 4,895,560 | 5,076 | 51.95 | VCIN00000000 |
| 114 | Heidelberg | Cattle | 2002 | 5,138,950 | 22,618 | 517 | 4,917,806 | 5,123 | 52.00 | VCIO00000000 |
| 115 | Heidelberg | Cattle | 2002 | 5,191,943 | 45,514 | 263 | 4,657,342 | 4,803 | 51.96 | VCIP00000000 |
| 116 | Heidelberg | Cattle | 2002 | 5,248,272 | 30,402 | 385 | 4,895,176 | 5,115 | 51.82 | VCIQ00000000 |
| 159 | Heidelberg | Turkey | 2002 | 5,111,403 | 31,495 | 310 | 4,737,325 | 4,924 | 51.78 | VCIR00000000 |
| 470 | Typhimurium | Swine | 1999 | 8,612,134 | 7,828 | 425 | 4,407,658 | 4,610 | 52.42 | VCSK00000000 |
| 471 | Typhimurium | Swine | 1999 | 5,001,947 | 20,290 | 490 | 4,718,137 | 4,882 | 52.32 | VCIT00000000 |
| 482 | Typhimurium | Turkey | 1999 | 4,960,480 | 24,216 | 417 | 4,670,043 | 4,763 | 52.22 | VCIU00000000 |
| 695 | Heidelberg | Turkey | 2000 | 5,071,071 | 28,231 | 380 | 4,907,961 | 5,026 | 51.96 | VCIV00000000 |
| 706 | Heidelberg | Turkey | 2000 | 4,897,846 | 25,101 | 405 | 4,522,077 | 4,649 | 52.13 | VDBX00000000 |
| 715 | Heidelberg | Turkey | 2000 | 4,848,412 | 36,230 | 279 | 4,613,597 | 4,714 | 52.15 | VCPT00000000 |
| 121 | Heidelberg | Cattle | 2002 | 4,846,037 | 36,611 | 379 | 4,843,682 | 5,006 | 52.23 | VCSL00000000 |
| N134 | Typhimurium | Chicken farm | Unknown | 5,086,478 | 92,540 | 130 | 4,508,660 | 4,683 | 52.00 | VCQG00000000 |
| N53 | Typhimurium | Chicken | Unknown | 5,049,701 | 19,622 | 577 | 4,912,152 | 5,091 | 52.23 | VCQH00000000 |
| 849 | Dublin | Cattle | 2005 | 5,047,829 | 42,899 | 236 | 4,599,915 | 4,802 | 51.99 | VCPU00000000 |
| 855 | Typhimurium | Cattle | 2006 | 5,014,625 | 49,906 | 226 | 4,499,875 | 4,632 | 52.05 | VCPV00000000 |
| 856 | Cerro | Cattle | 2006 | 4,568,478 | 21,626 | 437 | 4,470,137 | 4,521 | 52.42 | VCPW00000000 |
| N865 | Kentucky | Chicken | 2008 | 4,879,802 | 23,260 | 503 | 4,523,952 | 4,615 | 52.08 | VCQJ00000000 |
| 880 | Montevideo | Cattle | 2006 | 4,694,168 | 43,514 | 282 | 4,251,545 | 4,350 | 52.34 | VCIS00000000 |
| 891 | Anatum | Cattle | 2006 | 4,741,580 | 28,637 | 300 | 4,601,255 | 4,657 | 52.18 | VCPY00000000 |
| 990 | Heidelberg | Human | 2008 | 5,098,170 | 33,395 | 303 | 4,892,063 | 5,061 | 51.85 | VCQK00000000 |
| 1000 | Heidelberg | Human | 2009 | 5,087,599 | 23,713 | 453 | 4,773,954 | 4,962 | 51.87 | VCPZ00000000 |
| 1163 | Heidelberg | Human | 2007 | 4,950,681 | 49,656 | 344 | 4,678,168 | 4,854 | 52.01 | VCQB00000000 |
| N822 | Kentucky | Chicken farm | 2008 | 4,891,568 | 23,503 | 511 | 4,533,159 | 4,691 | 52.12 | VCQI00000000 |
| N860 | Kentucky | Chicken | 2008 | 4,880,247 | 27,698 | 417 | 4,486,160 | 4,589 | 52.02 | VDBM00000000 |
| N136 | Typhimurium | Chicken farm | Unknown | 5,082,919 | 41,441 | 275 | 4,700,886 | 4,820 | 52.02 | VCQC00000000 |
| N74 | Typhimurium | Chicken | Unknown | 5,099,545 | 35,108 | 326 | 4,587,257 | 4,780 | 51.88 | VCQD00000000 |
| N82 | Typhimurium | Chicken farm | Unknown | 5,056,644 | 22,986 | 497 | 4,740,914 | 4,928 | 52.12 | VCQE00000000 |
| N97 | Typhimurium | Chicken | Unknown | 5,054,428 | 36,102 | 279 | 4,729,717 | 4,859 | 52.04 | VCQF00000000 |