Skip to main content
. Author manuscript; available in PMC: 2020 Aug 14.
Published in final edited form as: Cell Host Microbe. 2019 Aug 14;26(2):283–295.e8. doi: 10.1016/j.chom.2019.07.008

Key Resources Table

REAGENT or RESOURCE SOURCE IDENTIFIER
Software and Algorithms
MEGAHIT (v1.1.2) (Li et al. 2015) https://github.com/voutcn/megahit
metaSPAdes (v3.13.0) (Nurk et al. 2017) https://github.com/ablab/spades
Prokka (v1.12) (Seemann 2014) https://github.com/tseemann/prokka
CD-HIT (v4.6.8) (Li and Godzik 2006) https://github.com/weizhongli/cdhit
Diamond (v0.9.24) (Buchfink et al. 2015) https://github.com/bbuchfink/diamond
Art (MountRainier) (Huang et al. 2012) https://www.niehs.nih.gov/research/resources/software/biostatistics/art/index.cfm
Data links and publicly available resource information Supplementary Table 1
Database of results https://microbial-genes.bio