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. 2019 Aug 23;12:207. doi: 10.3389/fnmol.2019.00207

TABLE 1.

A compilation of the MD-based studies that have been reported in this review article.

Receptor(s) Ligand(s) Force field Simulation technique Aggregate simulation length References
MOP TRV-130, Morphine, Ligand-free CHARMM36, CGenFF Unbiased MD 53.25 μs Schneider et al., 2016
MOP TRV-130, Morphine CHARMM36, CGenFF Adaptive sampling MD 460 μs Kapoor et al., 2017
MOP TRV-130, BU72, Naltrexone, β-FNA, Ligand-free CHARMM36, CGenFF Unbiased MD 1.5 μs Cheng et al., 2018
MOP BMS-986122, (R)-Methadone, Buprenorphine, Ligand-free AMBER03, Stockholm, GAFF Unbiased MD 5.2 μs Bartuzi et al., 2019
MOP, KOP Morphine, Levallorphan, JDTic, Ligand-free CHARMM36, CGenFF Unbiased MD 12.5 μs Yuan et al., 2015
KOP 5′-GNTI, 6′-GNTI, Ligand-free CHARMM36, CGenFF Unbiased MD 1.9 μs Cheng et al., 2016
KOP MP1104, JDTic, Ligand-free AMBER ff14SB, LIPID11, GAFF Gaussian accelerated MD 12 μs An et al., 2018
NOP Cebranopadol, C24, Ligand-free AMBER ff99SB Unbiased MD 3 μs Della Longa and Arcovito, 2019
DOP BMS-986187, SNC-80 CHARMM36, CGenFF Metadynamics 3.6 μs Shang et al., 2016
CB1 THC, THCV, Taranabant, Ligand-free CHARMM36, CGenFF Unbiased MD 8 μs Jung et al., 2018
CB1 CP 55,940, GAT228 CHARMM36, CGenFF MetaDynamics Saleh et al., 2018
OX2 Suvorexant AMBER ff98SB, GAFF, Lipid 14 Unbiased MD 400 ns Bai et al., 2018
OX2 Suvorexant, Nag26, Orexin-A, Ligand-free AMBER 99sb-ildn, Slipids, GAFF, OPSL-AA Unbiased MD 36 μs Karhu et al., 2019
D3R PF-4363467 CHARMM36, GAAMP Adaptive sampling MD 680 μs Ferruz et al., 2018
D2R, D3R SB269652 CHARMM36, GAAMP Adaptive sampling MD 76.5 μs Verma et al., 2018
D3R LS-3-134, 4 derivatives AMBER ff14SB, GAFF Unbiased MD 4.5 μs Hayatshahi et al., 2018
mGluR1 FITM CHARMM27, CGenFF Unbiased MD, Adaptive biasing force 150 ns, 360 ns Bai and Yao, 2016
mGluR5 Mavoglurant, Dipraglurant, Basimglurant, STX107, MPEP, Fenobam, 51D, 51E AMBER ff14SB, Lipid14, GAFF Unbiased MD 800 ns Fu et al., 2018