Table 1:
Peptide | Residue | KD for PPACK-IIa (μM) | |Δωmax| (ppm) | IIa residues in contact with PAR1 (49–62) |
---|---|---|---|---|
PAR1GFD | F55 | 251 | NA | F34, L65, 182 |
PAR1GFD | D50 | Solvent exchange issue | NA | R73 |
PAR1GKE | K51 | 167 ± 49 | 0.09 ± 0.02 | In vicinity of R73 |
PAR1GKE | E60 | 280 | NA | Not seen in X-ray (might contact I82, K110) |
PAR1GED | E53 | Too weak for KD calculation | NA | T74, Y76, and R75 |
PAR1GED | D58 | 36 ± 6.6 | 0.41 ± 0.05 | Not seen in X-ray (might contact R77a) |
For these HSQC titrations, the PAR1 peptide concentrations were maintained at 50 μM while the PPACK-thrombin concentrations were diluted serially. KD values were determined from in-house scripts written in Python. Experimental data employed for these calculations included the various concentrations of protein and peptide. In addition, 15N chemical shift differences for sets of free and bound conditions were utilized for F55, E60, and D58. 1H chemical shift differences were employed for the K51. The HSQC titrations were carried out at least in duplicate. A Monte-Carlo approach that assumes a 10% error in the serially diluted protein samples was employed for error analysis.