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. 2019 Aug 30;19:757. doi: 10.1186/s12879-019-4381-9

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — A ML phylogenetic tree of 600 Gene sequences constructed using Kilifi sequences and sequences obtained from GenBank, collected from 2007 to 2016. Sequences were subtyped using references sequences retrieved from GenBank. Reference sequences colored in red. The numbers next to branches indicate the bootstrap values. Subgroups were confirmed if sequences clustered with the reference sequences within a major branch with > 70% bootstrap support. Taxa colored in magenta represent strains that have 180 nucleotide duplications retrieved from GenBank. Kilifi sequences are colored in brown