Table 5.

Details about the transcriptome data used in this work. Overall gene number is the number of mutual genes between all the transcriptome data

Protocol	Year	Data accession	Technique	Naive samples	Primed samples	Genes
Hanna et al.	2010	GSE21222	Microarray	6	12	21754
Gafni et al.	2013	GSE46872	Microarray	9	3	20002
Valamehr et al.	2014	GSE50868	Microarray	9	8	21754
Theunissen et al.	2014	GSE59435	Microarray	5	2	20015
Takashima et al.	2014	E-MTAB-2857	RNA-seq	3	3	15950
Qin et al.	2016	GSE69200	Microarray	6	6	20756
Guo et al.	2016	E-MTAB-4461	RNA-seq	9	NAa	58726
Warrier et al.	2017	PRJNA356255	RNA-seq	27	9	23375
Overall				74	43	14352

^aGuo et al. used the primed hESC samples data from Takashima et al., a previous study by the same research group