Table 5. AR-Pred performance compared with other allosteric site prediction methods.
The percentage of proteins for which AR-Pred predicts the same or a larger number of true positive allosteric site residues relative to the other methods is tabulated. The calculations are performed at different percentile thresholds for the top 10, 20, 30, 40 and 50 percent of the predictions.
| Threshold Percent╲Method | AlloPred | AlloSitePro | SPACER |
|---|---|---|---|
| 10 | 80.0 | 93.3 | 86.7 |
| 20 | 80.0 | 93.3 | 86.7 |
| 30 | 73.3 | 93.3 | 86.7 |
| 40 | 86.7 | 93.3 | 80.0 |
| 50 | 86.7 | 93.3 | 66.7 |
| Median | 80.0 | 93.3 | 86.7 |