Table 4.
Item 1 | P1 | P2 | P3 | SEM 2 | p-value 3 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
H | C | L | H | C | L | H | C | L | Diet | Phase | D × P | ||
Ruminococcaceae_UCG-005 | 7.66 | 14.52 | 16.69 | 4.77 | 13.83 | 13.50 | 2.09 | 11.13 | 9.76 | 0.976 | 0.001 | <0.001 | 0.509 |
Prevotella_9 | 20.35 | 1.21 | 0.44 | 21.41 | 3.53 | 0.26 | 21.71 | 9.71 | 0.26 | 7.929 | <0.001 | 0.407 | 0.592 |
Succinivibrio | 9.48 | 3.85 | 4.41 | 7.68 | 4.87 | 2.94 | 4.17 | 5.25 | 2.34 | 1.408 | 0.008 | 0.249 | 0.248 |
Rikenellaceae_RC9_gut_group | 0.84 | 5.80 | 8.37 | 1.03 | 5.36 | 8.42 | 1.55 | 2.88 | 6.38 | 0.841 | <0.001 | 0.079 | 0.225 |
Bacteroides | 1.25 | 5.38 | 8.46 | 1.51 | 4.70 | 6.16 | 0.35 | 1.49 | 3.55 | 0.848 | <0.001 | <0.001 | 0.229 |
Clostridium_sensu_stricto_1 | 2.96 | 2.53 | 2.57 | 3.36 | 2.70 | 2.17 | 3.47 | 5.58 | 3.64 | 0.879 | 0.537 | 0.060 | 0.471 |
Ruminococcaceae_UCG-014 | 2.43 | 2.14 | 1.99 | 2.67 | 2.99 | 4.61 | 3.02 | 2.21 | 1.78 | 0.698 | 0.819 | 0.067 | 0.182 |
Phascolarctobacterium | 2.29 | 1.54 | 1.43 | 3.63 | 3.29 | 2.26 | 3.18 | 2.95 | 2.33 | 0.604 | 0.134 | 0.043 | 0.952 |
Prevotella_2 | 7.05 | 0.23 | 0.00 | 6.12 | 0.53 | 0.00 | 6.61 | 2.34 | 0.01 | 1.007 | <0.001 | 0.598 | 0.722 |
Alloprevotella | 1.89 | 1.90 | 0.25 | 2.65 | 1.67 | 1.49 | 5.26 | 2.37 | 1.61 | 0.875 | 0.020 | 0.070 | 0.433 |
Faecalibacterium | 4.49 | 0.19 | 0.01 | 5.47 | 0.70 | 0.05 | 6.62 | 0.96 | 0.01 | 0.943 | <0.001 | 0.493 | 0.874 |
Prevotellaceae_UCG-003 | 0.28 b | 7.14 a | 1.09 b | 0.51 b | 1.86 ab | 2.54 ab | 0.71 b | 2.18 ab | 2.72 ab | 1.130 | 0.007 | 0.441 | 0.043 |
Treponema_2 | 0.02 | 3.29 | 3.58 | 0.00 | 0.20 | 2.27 | 0.01 | 1.43 | 8.18 | 1.666 | 0.007 | 0.185 | 0.250 |
Christensenellaceae_R-7_group | 0.73 | 1.74 | 2.97 | 0.29 | 1.47 | 2.67 | 0.14 | 0.89 | 3.49 | 0.305 | <0.001 | 0.384 | 0.125 |
Ruminococcaceae_UCG-013 | 0.17 | 2.59 | 3.15 | 0.08 | 0.48 | 2.59 | 0.01 | 0.43 | 3.18 | 0.558 | <0.001 | 0.148 | 0.292 |
Eubacterium_coprostanoligenes_group | 0.39 | 2.26 | 2.27 | 0.55 | 0.82 | 2.04 | 0.27 | 0.65 | 2.91 | 0.397 | <0.001 | 0.331 | 0.076 |
Ruminococcaceae_UCG-010 | 0.34 | 1.92 | 2.87 | 0.19 | 1.11 | 2.26 | 0.02 | 0.66 | 2.33 | 0.288 | <0.001 | 0.025 | 0.513 |
Romboutsia | 1.50 | 1.37 | 1.97 | 0.49 | 1.05 | 1.46 | 0.71 | 1.55 | 1.44 | 0.253 | 0.007 | 0.027 | 0.373 |
Turicibacter | 0.67 | 0.55 | 0.97 | 0.32 | 0.73 | 0.95 | 2.42 | 1.89 | 1.92 | 0.280 | 0.620 | <0.001 | 0.266 |
Anaerostipes | 0.99 | 2.33 | 0.16 | 1.18 | 2.72 | 1.99 | 0.47 | 0.01 | 0.01 | 0.568 | 0.104 | 0.001 | 0.176 |
1 P1 indicates phase 1, P2 indicates phase 2, P3 indicates phase 3; H = stepwise high energy and protein diet, C = stepwise standard energy and protein diet, L = stepwise low energy and protein diet. 2 SEM = standard error of means. 3 Diet = the effect of diets, Phase = the effect of phases, D × P = the interaction between diet and phase, lowercase letters are marked only when the interaction was significant. a,b values within the same row with different superscripts differ.