Table 1.
List of sequenced isolates, characteristics, reference genomes, and sample accessions.
| Unique name | Species | DNA extraction conczentration (ng/μl) | Reference used | %G+C- content reference | Reference sequence accession | Number of reads produced | Sample accession | ||
|---|---|---|---|---|---|---|---|---|---|
| XT | Flex | Qia | |||||||
| ATCC25586 | Fusobacterium nucleatum | 36.4 | ATCC25586 | 27.15 | NC_003454.1 | 1,16,59,182 | 54,71,621 | 38,92,304 |
ERS3207828
(SAMEA5402510) |
| ATCC700819 | Campylobacter jejuni | 34.2 | ATCC700819 | 30.55 | NC_002163.1 | 51,04,723 | 80,67,749 | 5,37,051 |
ERS3207833
(SAMEA5402515) |
| ATCC25923 | Staphylococcus aureus | 88.4 | ATCC25923 | 32.86 | NZ_CP009361.1, NZ_CP009362.1 | 90,93,138 | 57,42,025 | 71,39,563 |
ERS3207824
(SAMEA5402506) |
| ATCC29212 | Enterococcus faecalis | 39.8 | ATCC29212 | 37.35 | NZ_CP008816.1, NZ_CP008815.1, NZ_CP008814.1 | 71,99,132 | 68,06,105 | 69,81,047 |
ERS3207826
(SAMEA5402508) |
| ATCC19615 | Streptococcus pyogenes | 20.8 | ATCC19615 | 38.48 | NZ_CP008926.1 | 78,95,584 | 60,46,735 | 94,81,835 |
ERS3207823
(SAMEA5402505) |
| ATCC25845 | Prevotella melaninogenica | 92.0 | ATCC25845 | 40.98 | NC_014370.1, NC_014371.1 | 69,93,760 | 21,62,813 | 52,57,867 |
ERS3207831
(SAMEA5402513) |
| ATCC25922 | Escherichia coli | 27.2 | ATCC25922 | 50.37 | CP009072.1 | 64,19,681 | 53,21,879 | 61,12,711 |
ERS3207827
(SAMEA5402509) |
| ATCC700603 | Klebsiella quasipneumoniae | 42.8 | ATCC700603 | 57.73 | NZ_CP014696.2, NZ_CP014697.2, NZ_CP014698.2 | 48,25,887 | 58,53,388 | 84,17,937 |
ERS3207829
(SAMEA5402511) |
| ATCC25177 (H37Ra) | Mycobacterium tuberculosis | 1.2 | ATCC25177 | 65.61 | NC_009525.1 | 47,94,204 | 96,95,720 | 2,54,69,645 |
ERS3207832
(SAMEA5402514) |
| ATCC27853 | Pseudomonas aeruginosa | 42.4 | ATCC27853 | 66.08 | CP015117.1 | 45,32,729 | 48,88,025 | 68,12,269 |
ERS3207825
(SAMEA5402507) |
| ATCCBAA-67 | Burkholderia stabilis | 72.0 | ATCCBAA-67 | 66.42 | NZ_CP016442.1, NZ_CP016443.1, NZ_CP016444.1 | 87,99,551 | 55,77,758 | 63,87,296 |
ERS3207822
(SAMEA5402504) |
| ATCC4698 | Micrococcus luteus | 45.6 | ATCC4698 | 73.00 | CP001628.1 | 50,81,588 | 93,96,130 | 85,84,319 |
ERS3207830
(SAMEA5402512) |
| NMB004374 | Enterococcus faecium | 55.8 | Aus0004 | 37.80 | NC_017022.1 | 53,87,832 | 52,12,078 | 77,60,492 |
ERS3207811
(SAMEA5402493) |
| NMB004375 | Enterococcus faecium | 55.8 | Aus0004 | 37.80 | NC_017022.1 | 52,85,502 | 44,62,856 | 55,05,430 |
ERS3207812
(SAMEA5402494) |
| NMB004376 | Enterococcus faecium | 55.4 | Aus0004 | 37.80 | NC_017022.1 | 49,36,762 | 28,48,407 | 88,145 |
ERS3207813
(SAMEA5402495) |
| NMB003061 | Enterococcus faecium | 56.2 | Aus0004 | 37.80 | NC_017022.1 | 41,98,651 | 52,13,009 | 84,72,370 |
ERS3207814
(SAMEA5402496) |
| NMB003076 | Enterococcus faecium | 47.2 | Aus0004 | 37.80 | NC_017022.1 | 61,97,648 | 64,57,841 | 75,28,868 |
ERS3207815
(SAMEA5402497) |
| NMB003240 | Enterococcus faecium | 57.6 | Aus0004 | 37.80 | NC_017022.1 | 71,97,873 | 75,30,750 | 81,14,687 |
ERS3207816
(SAMEA5402498) |
| NMB003062 (VRECH001) | Enterococcus faecium | 40.6 | Aus0004 | 37.80 | NC_017022.1 | 51,80,248 | 77,99,226 | 76,15,044 |
ERS2595418
(SAMEA4775467) |
| NMB004427 | Klebsiella aerogenes | 38.6 | KCTC2190 | 55.00 | NC_015663.1 | 62,65,626 | 34,05,502 | 68,37,549 |
ERS3207817
(SAMEA5402499) |
| NMB004428 | Klebsiella aerogenes | 25 | KCTC2190 | 55.00 | NC_015663.1 | 9,64,566 | 78,95,179 | 1,09,31,859 |
ERS3207818
(SAMEA5402500) |
| NMB004429 | Klebsiella aerogenes | 29 | KCTC2190 | 55.00 | NC_015663.1 | 4,27,144 | 67,01,537 | 60,70,575 |
ERS3207819
(SAMEA5402501) |
| NMB004430 | Klebsiella aerogenes | 24.8 | KCTC2190 | 55.00 | NC_015663.1 | 33,39,975 | 38,92,829 | 69,09,301 |
ERS3207820
(SAMEA5402502) |
| NMB004431 | Klebsiella aerogenes | 28.2 | KCTC2190 | 55.00 | NC_015663.1 | 46,70,831 | 86,19,114 | 56,84,285 |
ERS3207821
(SAMEA5402503) |