Antibodies |
|
phospho-p44/42 MAPK (Erk1/2) (20G11) |
Cell Signaling Technology |
Cat# 4376; RRID:AB_331772 |
phospho-p44/42 MAPK (Erk1/2) (E10) |
Cell Signaling Technology |
Cat# 9106; RRID:AB_331768 |
phospho-p44/42 MAPK (Erk1/2) (D13.14.4E) |
Cell Signaling Technology |
Cat# 4370; RRID:AB_2315112 |
P44–42 MAPK (Erk1/2) |
Cell Signaling Technology |
Cat#9102; RRID:AB_330744 |
CD11b (M1/70) |
BioLegend |
Cat# 101224; RRID:AB_755986 |
CD11b (M1/70.15) |
Invitrogen |
Cat# RM2817; RRID:AB_1464525 |
CD11c (N418) |
BioLegend |
Cat# 117324; RRID:AB_830649 |
PD-1 (J43) |
eBioscience |
Cat# 11–9985-85: RRID:AB_465473 |
PD-1 (29F.1A12) |
Biolegend |
Cat# 135215; RRID:AB_10696422 |
CTLA-4 (UC10–4B9) |
ThermoFisher |
Cat# 12–1522-81; RRID:AB_465878 |
CTLA-4 (UC10–4B9) |
eBioscience |
Cat# 17–1522-82; RRID:AB_2016700 |
LAG-3 (C9B7W) |
BioLegend |
Cat# 125209; RRID:AB_10639935 |
LAG-3 (eBioC9B7W) |
eBioscience |
Cat# 48–2231-82; RRID:AB_11149866 |
PD-L1 (10F.9G2) |
BioLegend |
Cat# 124311; RRID:AB_10612935 |
Armenian Hamster IgG (eBio299Arm) |
ThermoFisher |
Cat# 12–4888-81; RRID:AB_470073 |
CD3 (17A2, for flow cytometry) |
BioLegend |
Cat# 100214; RRID:AB_493645 |
CD3 (17A2, for flowcytometry) |
BioLegends |
Cat# 100221; RRID:AB_2057374 |
CD3 (145–2C11) |
BD PharMingen |
Cat# 561108/551163; RRID:AB_10562558/
RRID:AB_394082 |
EpCAM (G8.8) |
BioLegend |
Cat# 118215; RRID:AB_1236477 |
CD4 (GK1.5) |
BioLegend |
Cat# 100411; RRID:AB_312696 |
CD4 (GK1.5) |
BioLegend |
Cat# 100406; RRID:AB_312691 |
CD45 (30-F11) |
BioLegend |
Cat# 103108; RRID:AB_312973 |
CD8 (53–6.7) |
BioLegends |
Cat# 100734; RRID:AB_2075238 |
CD8 (5H19) |
Invitrogen |
Cat # MCD0817; RRID:AB_10374589 |
FoxP3 (FJK-16 s) |
eBioscience |
Cat# 17–5773-80; RRID:AB_469456 |
FoxP3 (FJK-16 s) |
eBioscience |
Cat# 25–5773-82; RROD:AB_891552 |
IFN-γ (XMG1.2) |
BioLegend |
Cat# 505825; RRID:AB_1595591 |
Ki-67 (16A8) |
BioLegend |
Cat# 652411; RRID:AB_2562663 |
Ki-67 (SolA15) |
Invitrogen |
Cat# 48–5698-82; RRID:AB_11149124 |
IgG1 (RTK2071) |
BioLegend |
Cat# 400415; RRID:AB_326521 |
IgG1 (RTK2071) |
BioLegend |
Cat# 400411; RRID:AB_326517 |
IgG2a (eBR2a) |
eBioscience |
Cat# 12–4321-81; RRID:AB_470051 |
IgG2a (eBR2a) |
eBioscience |
Cat# 17–4321-81; RRID:AB_470181 |
IgG2a (RTK2758) |
BioLegend |
Cat# 400521; RRID:AB_326542 |
IgG2a (RTK2758) |
BioLegend |
Cat# 400535; RRID:AB_10933427 |
TIM3 (RMT3–23) |
eBioscience |
Cat# 12–5870-81; RRID:AB_465973 |
Tbet (eBio4B10) |
eBioscience |
Cat# 12–5825-82; RRID:AB_925761 |
ICOS (c398.4A) |
eBioscience |
Cat# 11–9949-82; RRID:AB_465458 |
4–1BB (17B5) |
eBioscience |
Cat# 12–1371-83; RRID:AB_465865 |
GITR (DTA-1) |
eBioscience |
Cat# 48–5874-82; RRID:AB_1944394 |
OX40 (OX-86) |
eBioscience |
Cat# 17–1341-82; RRID:AB_10717260 |
CD62L (MEL-14) |
eBioscience |
Cat# 56–0621-82; RRID:AB_494003 |
CD44 (IM7) |
BD PharMingen |
Cat# 559250; RRID:AB_398661 |
Anti Fcgamma, purified |
MSK Antibody and Bioresource Core |
Clone: 2.4G2 |
CD3 (for in vitro T cell
activation) |
MSK Antibody and Bioresource Core |
Clone: 145–2C11 |
CD28 (for in vitro T cell
activation) |
MSK Antibody and Bioresource Core |
Clone: 37N |
mouse anti-CTLA-4 (9H10, in
vivo antibody) |
Bioxcell |
Cat# BE0131; RRID:AB_10950184 |
mouse anti-CTLA-4 (9D9, in
vivo antibody) |
Bioxcell |
Cat# BE0164; RRID:AB_10949609 |
Syrian Hamster IgG |
Bioxcell |
Cat# BE0087; RRID:AB_1107782 |
InVivoMAb mouse IgG2b isotype control
(MCP-11) |
Bioxcell |
Cat# BE0086; RRID:AB_1107791 |
mouse anti-PD-1 (RMP1–14, for
in vivo experiment) |
Bioxcell |
Cat# BE0146: RRID:AB_10949053 |
InVivoMAb rat IgG2a isotype control (2A3) |
Bioxcell |
Cat# BE0089; RRID:AB_1107769 |
NK1.1 (PK136, in vivo
antibody) |
Bioxcell |
Cat#BE0036; RRID: AB_1107737 |
|
Bacterial and Virus Strains |
|
Ad5CMVCre |
UI Viral Vector Core Web |
VVC-U of Iowa-5 |
|
Chemicals, Peptides, and
Recombinant Proteins |
|
Selumetinib |
Selleckchem |
Cat# S1008 |
Trametinib |
Selleckchem |
Cat# S2673 |
gp100 peptide, human |
Anaspec Inc |
Cat# AS-62589 |
Recombinant mouse IL-2 |
eBioscience |
Cat# 14–8021-64 |
Fixable viability dye (for flow
cytometry) |
eBioscience |
Cat# 65–0866-14 |
|
Critical Commercial Assays |
|
LIVE/DEAD Fixable Aqua Dead Cell Stain
Kit |
ThermoFisher |
Cat# L34966
|
CD5 (Ly-1) MicroBeads, mouse |
Miltenyi |
Cat# 130–049-301 |
Luminex cytokine analysis (mouse)-MILLIPLEX
MAP Mouse Cytokine/Chemokine Magnetic Bead Panel - Immunology Multiplex
Assay |
Millipore |
Cat# MCYTMAG-70K-PX32 |
Mouse Cytokine 23-plex Assay |
Bio-Rad |
#m60009rdpd |
Cell titer Glo luminescent cell viability
assay |
Promega |
G7571 |
QUICK RNA FFPE Kit |
Zymo Research |
R1008 |
|
Deposited Data |
|
Affymetrix transcriptome data |
NCBI Gene Expression Omnibus |
GEO: GSE126202
|
|
Experimental Models: Cell
Lines |
|
Mouse; CL13 |
Dr. Phillip A. Dennis |
PMID: 26637667 |
Mouse; CL25 |
Dr. Phillip A. Dennis |
PMID: 26637667 |
Mouse; IO33 |
Dr. Phillip A. Dennis |
PMID: 26637667 |
Mouse; HKP1 |
Dr. Vivek Mittal laboratory (WCMC) |
PMID: 25704820 |
Mouse; LLC |
ATCC |
ATCC® CRL-1642 |
Mouse;
KrasG12DTrp53fl/fl cell line from GEMM |
Dr. Kwok-Kin Wong laboratory (NYU) |
N/A |
Mouse: primary T lymphocytes |
This study |
N/A |
|
Experimental Models:
Organisms/Strains |
|
Mouse; KRASLSL-G12C GEMM |
Dr. Kwok-Kin Wong laboratory (NYU) |
PMID: 29945997 |
Mouse; Pmel TCR transgenic mouse |
Dr. Nicholas Restifo laboratory (NIH) |
PMID: 12925674 |
Mouse; Rag1–/–;
B6.129S7-Rag1tm1Mom/J |
Jax lab |
Jax 002216 |
Mouse; C57BL/6J; C57BL/6J |
Jax lab |
Jax 000664 |
|
Software and Algorithms |
|
3D slicer |
Online download |
https://www.slicer.org/
|
GraphGad Prism 7 |
Online download |
https://www.graphpad.com/scientific-software/prism/
|
FlowJo v.10 |
Online download |
https://www.flowjo.com/solutions/flowjo/downloads
|
IVIS Living image software v. 4.4 |
Perkin Elmer |
http://www.perkinelmer.com/category/in-vivo-imaging-software?gclid=EAIaIQobChMIoK2N_LKW4AIVk4TICh0LeAU9EAAYASACEgLwr_D_BwE
|
Transcriptome Analysis Console (TAC) Software
v.4.0 |
ThermoFisher Scientific |
https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/affymetrix-transcriptome-analysis-console-software.html
|
Robust Multi-array Average (RMA)
procedure |
Irizarry et
al., 2003a
|
https://www.rdocumentation.org/packages/affy/versions/1.50.0/topics/rma
|
|
Other |
|
MRI imaging |
Dana-Farber Cancer Institute’s Lurie
Family Imaging Center |
http://www.lfic.dfci.harvard.edu/about
|
Affymetrix microarray Assay |
ThermoFisher Scientific |
Mouse Clariom D Pico assay |