Table 1.
List and characteristics of Pantoea strains used in the current study.
| Species | Strain | Genome Size (Mb) | Plasmid | Description/References | GenBank Accession | |
|---|---|---|---|---|---|---|
| Pantoea agglomerans | 1 | C410P1 (Complete) | 5.11524 | Y | Isolated from lettuce in China (Anhui province); Biocontrol agent | CP016889.1 |
| 2 | FDAARGOS_160 (Complete) | 4.80881 | Y | Isolated from wound swab of human (Homo sapiens); Children’s National Hospital, the United States | CP014129.1 | |
| 3 | Tx10 (Scaffold) | 4.85699 | N | Isolated from sputum from a cystic fibrosis patient (Homo sapiens) in Canada; produces multiple antibiotics that are effective against Erwinia amylovora, Staphylococcus aureus, S. epidermidis, and Escherichia coli; biocontrol agent [28] | ASJI00000000.1 | |
| 4 | Eh318 (Scaffold) | 5.03584 | N | Isolated from the stem of an asymptomatic apple (NY, the United States); produces two antibiotics, named pantocin A and B, that are effective against Erwinia amylovora [29] | AXOF00000000.1 | |
| 5 | 190 (Scaffold) | 5.00257 | N | Isolated from soil in South Korea [30] | JNGC00000000.1 | |
| 6 | MP2 (Scaffold) | 4.73383 | N | Isolated from fungus-growing termites (Macrotermes natalensis) in South Africa [31] | JPKQ00000000.1 | |
| 7 | IG1 (Contig) | 4.82958 | N | Isolated from Japan; grows symbiotically with various plants; the lipopolysaccharides derived from P. agglomerans IG1 were effective in the prevention of various diseases, such as bacterial or viral infection, lifestyle-related diseases [32] | BAEF00000000.1 | |
| 8 | NBRC 102470 (contig) | 4.65204 | N | Isolated from Japan | BCZA00000000.1 | |
| 9 | DAPP-PG734 (Contig) | 5.36593 | N | A hypersensitive reaction-inducing Pantoea agglomerans strain isolated from olive knots caused by Pseudomonas savastanoi pv. savastanoi [33] | JNVA00000000.1 | |
| 10 | 4 (Scaffold) | 4.82789 | N | Isolated from wheat (Triticum aestivum) seed in Canada | JPOT00000000.2 | |
| 11 | 3 (Scaffold) | 4.81358 | N | Isolated from wheat (Triticum aestivum) seed in Canada | LVHW00000000.1 | |
| 12 | 824-1 (Scaffold) | 4.98907 | N | Elicits galls on Gypsophila paniculata and hypersensitive response (HR) on beet; isolated from NY (the United States) | LXSX00000000.1 | |
| 13 | 4188 (Scaffold) | 5.002 | N | Isolated from Beta vulgaris in NY (the United States); causes galls on beet and gypsophila | LXSW00000000.1 | |
| 14 | P5 (Scaffold) | 3.52764 | N | Isolated from soil (desert) in Iran | NGNU00000000.1 | |
| 15 | NFPP29(Scaffold) | 4.10462 | N | - | FUWI00000000.1 | |
| Pantoea agglomerans | 16 | LMAE-2 (Contig) | 4.98116 | N | Isolated from seabed sediment moderately contaminated with Cu2+ in Puerto Montt (Chile); a copper-resistant marine bacterium with potential use in bioremediation [34] | JWLQ00000000.1 |
| 17 | P10c (Contig) | 4.77592 | Y | Isolated from pear blossoms in New Zealand; ability to rapidly colonize apple and pear flowers and to suppress fire blight disease; developed as a commercial biocontrol agent [35] | LIME00000000.1 | |
| 18 | DSM 3493 (contig) | 4.65938 | N | Type strain of Pantoea agglomerans | FYAZ00000000.1 | |
| 19 | Pa (Contig) | 4.79516 | N | Isolated from rhizosphere of durum wheat in arid environment Bousaada (Algeria) | MUJJ00000000.1 | |
| Pantoea vagans | 20 | ZBG6 (Contig) | 4.729 | N | Isolated from soil in Zellenberg (France) | LFQL00000000.1 |
| 21 | PaVv11 (Scaffold) | 4.85077 | N | - | CEFP00000000.1 | |
| 22 | C9-1 (Complete) | 4.88834 | Y | Commercially registered for biological control of fire blight, a disease of pear and apple trees caused by Erwinia amylovora [36] | CP002206.1 | |
| 23 | MP7 (Scaffold) | 4.5987 | N | Isolated from fungus-growing termites (Macrotermes natalensis) in South Africa [31] | JPKP00000000.1 | |
| 24 | RIT273 (Contig) | 5.36534 | N | Isolated from Willow (Salix sp.) in NY (the United States) | JFOK00000000.1 | |
| 25 | 299R (Contig) | 4.58148 | N | A spontaneous rifampin-resistant derivative of the phyllosphere model bacterium isolate 299, a pigmented bacterium that was recovered from healthy leaves of a Bartlett pear tree near Healdsburg, CA [37] | ANKX00000000.1 | |
| 26 | 848_PVAG (Contig) | 4.99032 | N | Isolated from human (Homo sapiens) in WA (the United States) | JUQR00000000.1 | |
| 27 | LMG 24199 (Complete) | 4.79033 | 2 | Type strain of Pantoea vagans | CP038853.1 |