Table 2.

Enriched GO terms and KEGG pathways of different response gene sets at differentiation stages

Differentiation stage	GO enrichment (biological process)	Gene count	Log (q-value)	KEGG pathway	Gene count	Log (q-value)
Early positive response gene set	Muscle structure development	59	−6.72	PI3K-Akt signaling pathway	31	−2.40
	ncRNA metabolic process	52	−6.68	Regulation of actin cytoskeleton	19	−1.39
	Cellular protein localization	46	−5.57	MAPK signaling pathway	17	−0.43
	Ribosome biogenesis	34	−6.12	DNA replication	14	−4.43
Early negative response gene set	Actin filament-based process	63	−6.70	WNT signaling pathway	27	−7.21
	Response to growth factor	57	−5.08	Apoptosis	18	−2.86
	Muscle structure development	52	−4.71	FOXO signaling pathway	17	−2.74
	Regulation of system process	50	−5.51	HIF-1 signaling pathway	14	−2.47
Late response gene set	Cell division	65	−28.52	Cell cycle	18	−7.29
	Lipid biosynthetic process	31	−3.473	Steroid biosynthesis	8	−6.08
	Steroid biosynthetic process	21	−8.212	p53 signaling pathway	8	−2.12
	Fatty acid metabolic process	14	−0.713	PPARγ signaling pathway	7	−1.38