Table 1.

Population genetic descriptive metrics for T. cruzi I clones from Bella Maria (Cluster 1), El Huayco and Ardanza (Cluster 2)

Group (n)	PS	Median π	Median θ	PS at MAF > 0.05	PRS (vs. BM/EH/AR)	SS	PS in HW Equilibrium	HS	Fixed HS
Bella Maria (15)	96,691	0.09	0.001	48%	0/40,177/40,262	14,013	87,500	58,102	2134
El Huayco (12)	80,052	0.15	0.001	70%	23,538/0/18,016	4525	33,980	58,980	44,945
Ardanza (11)	78,325	0.16	0.001	71%	21,896/16,289/0	6064	35,799	58,392	45,287

Please see Supplementary Table 3 for analogous results from analysis repeated with only one parasite clone per vector/host. PS polymorphic sites, π nucleotide diversity, per site, θ Watterson estimator, per site, MAF within-group minor allele frequency, PRS private sites, SS singleton sites, HW Hardy–Weinberg, HS heterozygous sites