Table 2.
List of DEGs involved in mitochondrial oxidative phosphorylation process in PI1 and PI2 in comparison to BI.
| Protein Name | Gene Name | Gene ID | Gene Description | Log2 (Fold Change)/PI1 vs. BI | padj/PI1 vs. BI | Log2 (Fold Change)/PI2 vs. BI | padj/PI2 vs. BI |
|---|---|---|---|---|---|---|---|
| Ndufb7 | PAS_chr1-1_0172 | 8196676 | Hypothetical protein | −1.0432 | 1.07 × 10−89 | −1.4134 | 1.01 × 10−108 |
| Ndufa2 | PAS_chr1-4_0575 | 8197446 | NADH-ubiquinone oxidoreductase | −1.2501 | 4.90 × 10−108 | −1.2525 | 6.41 × 10−106 |
| Ndufa5 | PAS_chr1-4_0371 | 8197883 | Hypothetical protein | −1.2085 | 1.92 × 10−191 | −1.1128 | 1.15 × 10−158 |
| Ndufs6 | PAS_chr2-2_0235 | 8198642 | Hypothetical protein | −1.1401 | 1.73 × 10−156 | −1.1829 | 6.66 × 10−160 |
| Ndufa9 | PAS_chr3_1188 | 8199532 | Hypothetical protein | −1.0381 | 5.51 × 10−229 | -- | -- |
| Ndufs2 | PAS_chr3_0808 | 8200498 | Hypothetical protein | −1.0048 | 1.02 × 10−157 | -- | -- |
| Ndufa6 | PAS_chr4_0535 | 8201285 | Hypothetical protein | −1.0031 | 6.90 × 10−124 | -- | -- |
| SDHD | PAS_chr3_0424 | 8199556 | Membrane anchor subunit of succinate dehydrogenase | −1.3199 | 3.86 × 10−139 | −1.4013 | 1.19 × 10−148 |
| ISP | PAS_chr2-1_0850 | 8198393 | Hypothetical protein | −1.2036 | 0 | -- | -- |
| Cyt1 | PAS_chr3_0997 | 8199742 | Cytochrome c1 | −1.2324 | 3.89 × 10−174 | −1.1014 | 8.88 × 10−171 |
| QCR2 | PAS_chr2-2_0430 | 8199133 | Subunit 2 of the ubiquinol Cytochrome-c reductase complex | −1.1952 | 2.78 × 10−246 | −1.0056 | 3.22 × 10−204 |
| QCR7 | PAS_chr1-1_0322 | 8196587 | Subunit 7 of the ubiquinol Cytochrome-c reductase complex | −1.199 | 3.64 × 10−298 | −1.0103 | 7.86 × 10−205 |
| QCR8 | PAS_chr1-4_0313 | 8197763 | Subunit 8 of ubiquinol Cytochrome-c reductase complex | −1.0855 | 1.41 × 10−265 | -- | -- |
| QCR9 | PAS_chr4_0520 | 8201463 | Hypothetical protein | −1.125 | 2.36 × 10−58 | -- | -- |
| QCR10 | PAS_chr2-1_0717 | 8198335 | Hypothetical protein | −1.4053 | 6.25 × 10−212 | −1.3829 | 1.80 × 10−136 |
| COX10 | PAS_chr1-3_0194 | 8196833 | Heme A: farnesyltransferase | −1.2751 | 7.51 × 10−119 | −1.0158 | 3.44 × 10−78 |
| COX7A | PAS_chr2-2_0265 | 8198670 | Hypothetical protein | −1.5686 | 5.23 × 10−35 | −1.7976 | 6.61 × 10−42 |
| COX7C | PAS_chr2-2_0266 | 8198671 | Subunit VIII of cytochrome c oxidase | −1.1987 | 3.73 × 10−43 | −1.0889 | 3.07 × 10−25 |
| COX11 | PAS_chr2-1_0226 | 8198685 | Mitochondrial inner membrane protein required for delivery of copper to the Cox1p subunit of cytochrome C | −1.4389 | 4.15 × 10−163 | −1.3231 | 5.35 × 10−138 |
| COX7A | PAS_chr2-1_0746 | 8198951 | Hypothetical protein | −1.378 | 3.59 × 10−114 | −1.4629 | 1.67 × 10−104 |
| COX5B | PAS_chr2-1_0361 | 8199049 | Subunit IV of cytochrome c oxidase | −1.2454 | 1.34 × 10−99 | −1.415 | 2.08 × 10−124 |
| COX4 | PAS_chr3_0615 | 8199817 | Subunit Va of cytochrome c oxidase | −1.2259 | 0 | −1.2926 | 0 |
| COX5A | PAS_chr3_0824 | 8200317 | Subunit VI of cytochrome c oxidase | −1.4422 | 0 | −1.6052 | 0 |
| COX6B | PAS_chr4_0422 | 8200705 | Subunit VIb of cytochrome c oxidase | −1.9104 | 0 | −2.2113 | 0 |
| COX15 | PAS_chr4_0449 | 8201398 | Protein required for the hydroxylation of heme O to form heme A | −1.4388 | 1.40 × 10−318 | −2.1416 | 0 |
| COX6A | PAS_chr2-1_0363 | 8198106 | Subunit VIa of cytochrome c oxidase | -- | -- | −1.0228 | 4.76 × 10−53 |
| epsilon | PAS_chr2-1_0612 | 8198937 | Hypothetical protein | −1.2169 | 2.50 × 10−212 | −1.1389 | 7.07 × 10−138 |
| k | PAS_chr3_0161 | 8199436 | Hypothetical protein | −1.3219 | 1.50 × 10−50 | −1.3717 | 3.29 × 10−37 |
| β | PAS_chr2-2_0165 | 8198741 | β subunit of the F1 sector of mitochondrial F1F0 ATP synthase | −1.2684 | 1.44 × 10−170 | −1.2277 | 3.37 × 10−182 |
| α | PAS_chr3_0576 | 8199781 | α subunit of the F1 sector of mitochondrial F1F0 ATP synthase | −1.029 | 9.73 × 10−114 | -- | - |
| g | PAS_chr3_0819 | 8200313 | Subunit g of the mitochondrial F1F0 ATP synthase | −1.1936 | 1.58 × 10−125 | −1.1555 | 1.52 × 10−124 |
| Ppase /EC 3.6.1.1 |
PAS_chr1-3_0070 | 8197380 | Mitochondrial inorganic pyrophosphatase | −1.2811 | 5.87 × 10−273 | −1.2728 | 7.19 × 10−257 |
A dash line indicates no significant change in comparison to BI.