Table 7.
Genetic biocontrol determinants of P. brassicacearum 3Re2-7 - Pathogen inhibition.
| Biocontrol Trait | Locus Tag (Gene Name) | Predicted EC Number and Protein Function | log2 (TPM ) |
|---|---|---|---|
| ELZ14_01095 (-) | n.a.; TonB-dependent siderophore receptor | 0.32 | |
| ELZ14_04245 (fur) | n.a.; ferric iron uptake transcriptional regulator | 8.94 | |
| ELZ14_10605 (-) | n.a.; TonB-dependent siderophore receptor | 1.14 | |
| ELZ14_12290 (hcsK) | n.a.; siderophore-iron reductase FhuF | 4.09 | |
| ELZ14_13330 (pchB) | n.a.; isochorismate lyase | 4.10 | |
| ELZ14_14280 (-) | n.a.; TonB-dependent siderophore receptor | 2.35 | |
| ELZ14_16995 (-) | n.a.; TonB-dependent siderophore receptor | 1.85 | |
| Iron acquisition | ELZ14_18660 (-) | n.a.; TonB-dependent siderophore receptor | 0.84 |
| ELZ14_21210 (pvdA) | EC 1.14.13.196; ornithine monooxygenase | 1.30 | |
| ELZ14_21260 (-) | n.a.; nonribosomal peptide synthetase | 1.42 | |
| ELZ14_21280 (-) | n.a.; TonB-dependent siderophore receptor | 2.82 | |
| ELZ14_21285 (-) | n.a.; nonribosomal peptide synthetase | 3.41 | |
| ELZ14_24950 (-) | n.a.; siderophore-interacting protein | 4.42 | |
| ELZ14_26060 (-) | n.a.; TonB-dependent siderophore receptor | 0.26 | |
| ELZ14_28775 (-) | n.a.; TonB-dependent siderophore receptor | 0.46 | |
| ELZ14_14600 (-) | n.a.; matrixin family metalloprotease | 12.59 | |
| ELZ14_14610 (prsD) | n.a.; type I secretion system permease/ATPase PrsD | 5.81 | |
| Exoprotease activity | ELZ14_14615 (-) | n.a.; HlyD family type I secretion periplasmic adaptor subunit | 6.32 |
| ELZ14_14620 (-) | n.a.; peptidase | 4.73 | |
| ELZ14_20130 (-) | n.a.; Hcp family type VI secretion system effector | 1.77 | |
| Chitinase activity | ELZ14_25035 (nagA) | EC 3.5.1.25; N-acetylglucosamine-6-phosphate deacetylase | 2.72 |
Transcript Per Million.