Table 2.
Strains tested to assess specificity of Duo Chikungunya virus (CHIKV) RT-qPCR assay.
| Genus | Virus Species and Acronyms | Strain (Viral Load TCID50/mL) | Reference on EVAg or NCPV Catalog | |
|---|---|---|---|---|
| Alphavirus | Chikungunya virus | CHIKV-West African | UVE/CHIKV/1983/SN/WA 37997 (10 6.22) | 001V-02448 (EVAg) |
| CHIKV-Asian | H20235/STMARTIN/2013 (10 5.57) | 001N-EVAg1583 (EVAg) | ||
| CHIKV-ECSA1 | UVE/CHIKV/UNK/XX/ROSS (10 6.49) | 001v-EVA1455 (EVAg) | ||
| CHIKV-ECSA2 | UVE/CHIKV/2011/CD/Brazza_MRS1 (10 6.57) | 001v-EVA960 (EVAg) | ||
| CHIKV-ECSA3 | UVE/CHIKV/2006/RE/LR2006_OPY1 (10 8.49) | 001v-EVA83 (EVAg) | ||
| Mayaro virus | MAYV | UVE/MAYV/1954/TT/TC625 (10 8.82) | 001v-EVA502 (EVAg) | |
| O’nyong-nyong virus | ONNV | UVE/ONNV/UNK/SN/Dakar 234 (10 4.22) | 001v-EVA1044 (EVAg) | |
| Semliki Forest virus | SFV | UVE/SFV/UNK/XX/1745 (10 4.42) | 001V-02468 (EVAg) | |
| Ross River virus | RRV | 0005281v (10 8.16) | 0005281v (NCPV) | |
| Sindbis virus | SINV | UVE/SINV/UNK/EG/Egypt 339 (10 4.32) | 001V-02469 (EVAg) | |
| Western equine encephalitis virus | WEEV | UVE/WEEV/UNK/XX/47a (10 8.32) | 001v-EVA1479 (EVAg) | |
| Venezuelan equine encephalitis virus | VEEV | UVE/VEEV/UNK/XX/TC83 vaccine (10 9.42) | 001v-EVA1459 (EVAg) | |
| Eastern equine encephalitis virus | EEEV | UVE/EEEV/1999/XX/H178_99 (10 7.82) | 001v-EVA1480 (EVAg) | |
| Flavivirus | Zika virus | ZIKV | UVE/ZIKV/1947/UG/MR766 (10 4.32) | 001v-EVA143 (EVAg) |
| Dengue virus-1 | DENV-1 | UVE/DENV-1/2013/NC/CNR_17132 (10 7.57) | 001V-03151 (EVAg) | |
| Dengue virus-2 | DENV-2 | UVE/DENV-2/1996/PF/Papeete 341.175 (10 7.82) | 001V-03178 (EVAg) | |
| Dengue virus-3 | DENV-3 | UVE/DENV-3/UNK/RE/CNR_14448 (10 7.22) | 001V-03346 (EVAg) | |
| Dengue virus-4 | DENV-4 | UVE/DENV-4/2012/GF/CNR_16008 (10 8.49) | 001V-03366 (EVAg) | |
| Japanese encephalitis virus | JEV | UVE/JEV/2009/LA/CNS769 (10 5.57) | 001V-02217(EVAg) | |
| West Nile virus | WNV | UVE/WNV/2008/US/R94224 (10 7.32) | 001V-02224 (EVAg) | |
| Tick-borne encephalitis virus | TBEV | UVE/TBEV/2013/FR/32.11 WT-PCR (10 8.82) | 001V-02355 (EVAg) | |
| Yellow fever virus | YFV | UVE/YFV/UNK/XX/Vaccine strain 17D (10 6.32) | 001v-EVA67 (EVAg) | |
| Saint Louis encephalitis virus | SLEV | UVE/SLEV/UNK/US/MSI-7 (10 4.82) | 001v-EVA128 (EVAg) | |
| Usutu virus | USUV | UVE/USUV/1959/ZA/SAAR-1776 (10 5.32) | 001v-EVA138 (EVAg) | |
| Phlebovirus | Toscana virus | TOSV | UVE/TOSV/2013/FR/113 (10 7.42) | 001V-02461 (EVAg) |
| Rift Valley fever virus | RVFV | UVE/RVFV/UNK/XX/Smithburn vaccine (10 7.32) | 001V-02385 (EVAg) | |
| Sandly fever Sicilian virus | SFSV | UVE/SFSV/1943/IT/Sabin (10 6.82) | 001v-EVA77 (EVAg) | |