Table 3. Identification of local imputation inaccuracies. Chip data from each of the 24 founders was imputed using the remaining 23 founder animals as the reference panel. Coefficients of determination (R²) were calculated for each variant in order to calculate average R² for SSC1, SSC2, SSC4, SSC7, SSC17, and SSC18.

Chromosome	Average R2	SD
1	0.28	0.32
2	0.22	0.29
4	0.25	0.30
7	0.25	0.31
17	0.18	0.25
18	0.29	0.32