Table 1. List of SNPs correlated with phenotype. See Table S3 for full list of variants.

Isolate	Media	Gene ID	Gene common	Impact	Copy No	Mutation1
185	Caffeine 30 mM, Nystatin 14 μg/ml	B03950		Stop gained	Het	Arg182*
		E01960	YND1	Stop gained	Het	Gln456*
		F01150	SFL2	Stop gained	Het	Gln289*
		H02450	CDC39	Stop gained	Het	Gln1194*
		B03390	SLD1	Start lost	Het	Met1?
		C04260	TSA1	Stop gained	Hom	Leu135*
		G04310	ZCF29	Stop gained	Hom	Gln814*
425	Ketoconazole 0.1 μg/ml	C01460	RAD50	Stop gained	Het	Tyr599*
		D06060	RGD2	Stop gained	Het	Gln581*
		D01450	RVS162	Stop gained	Het	Tyr56*
		E03200		Stop gained	Het	Leu32*
		H01350		Stop gained	Het	Trp288*
425, 426, 436, 504, 831	Fluconazole 8 μg/ml and 10 μg/ml	A02170	AIP1	Stop gained	Het	Lys4*
423	BPS 300 μM and 500 μM	E04360		Stop gained	Het	Arg143*
435	Calcofluor White 15 μM	B06120	APM4	Stop gained	Het	Tyr20*
		H00190	FRP2	Stop gained	Het	Ser540*
1799, 423, 434, 428	SDS 0.08%, 2% starch	B11130	YOR296W	Start lost	Hom	Met1?
		B11240		Stop gained	Hom	Trp2*
		E01950		Stop gained	Het (428 Hom)	Lys215*

¹* = Non-synonymous SNP leading to stop codon at indicated amino acid position, Met1? = Methionine (start codon) at amino acid position 1 is lost.