Table 1.
Summary of the transcriptome database generated from one lane of Illumina RNA-Seq of Narcissus papyraceus stage 1 bulbs.
| N. papyraceus | |
|---|---|
| Total number of raw paired reads a | 70,409,091 |
| Total number of surviving paired reads trimmed b | 64,038,268 |
| Total number of surviving paired reads normalized c | 8,945,044 |
| Number of transcripts d | 148,563 |
| Number of components e | 86,994 |
| Number of annotated transcripts f | 8866 |
| N50 of annotated transcripts (bp) | 2043 |
a Number of paired reads obtained from the sequencer; b number of remaining paired reads after the trimming step; c number of remaining paired reads after the normalization step; d number of transcripts: Trinity has created a list of transcripts representing the transcriptome variants. e A component is a family of similar transcripts, most likely RNA variants; f Each transcript has been aligned against the uniprot_sprot.trinotate_v2.0.pep protein database using the blastx program from the NCBI BLAST family.