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. 2019 Aug 7;10(8):594. doi: 10.3390/genes10080594

Table 2.

Summary of the biosynthetic genes identified in the N. papyraceus transcriptome known to be involved in Amaryllidaceae alkaloid metabolism.

Name Reads (FPKM) Length (bp) ORF (bp) Top Annotation Species Expect Value Accession Number
TYDC1 1881 1641 1536 tyrosine/DOPA decarboxylase 2 Papaver somniferum 0 P54769.1
TYDC2 1111 2004 1356 tyrosine decarboxylase 1 Oryza sativa 0 Q7XHL3.1
PAL1 1911 2277 2130 phenylalanine ammonia-lyase 3 Petroselinum crispum 0 P45729.1
PAL2 1790 2395 2136 phenylalanine ammonia-lyase 1 Prunus avium 0 O64963.1
PAL3 1790 2395 2136 phenylalanine ammonia-lyase 1 Prunus avium 0 O64963.1
C4H1 3309 1792 1518 cinnamic acid 4-hydroxylase Zinnia violacea 0 Q43240.1
C4H2 3309 1743 1518 cinnamic acid 4-hydroxylase Zinnia violacea 0 Q43240.1
C3H 2018 1830 1530 p-coumarate 3-hydroxylase Arabidopsis thaliana 0 O22203.1
4CL1 1645 1846 1710 4-coumarate:CoA ligase 2 Oryza sativa 0 Q42982.2
4CL2 1173 1994 1683 4-coumarate:CoA ligase-like 7 Oryza sativa 0 Q69RG7.1
4CL3 1173 1834 1614 4-coumarate:CoA ligase-like 7 Arabidopsis thaliana 0 Q9M0 × 9.1
4CL4 1173 2023 1653 4-coumarate:CoA ligase-like 4 Oryza sativa 0 Q10S72.1
HCT1 2572 1633 1311 hydroxycinnamoyltransferase 1 Oryza sativa 0 Q0JBZ8.1
HCT2 2572 1807 1416 hydroxycinnamoyltransferase 2 Nicotiana tabacum 2 × 10−96 Q8GSM7.1
HCT3 2572 1612 1308 hydroxycinnamoyltransferase 3 Oryza sativa 1 × 10−105 Q5SMM8.1
NBS 1352 729 480 norbelladine synthase Narcissus pseudonarcissus ‘King Alfred’ 1 × 10−96 AYV96792.1
N4OMT 21722 1062 720 norbelladine 4’-O-methyltransferase Narcissus aff. pseudonarcissus 2 × 10−171 A0A077EWA5.1
CYP96T1 16956 1866 1605 noroxomaritidine synthase (CYP96T1) Narcissus aff. pseudonarcissus 0 A0A140IL90.1
CYP96T2 16956 1839 1605 noroxomaritidine synthase (CYP96T1) Narcissus aff. pseudonarcissus 0 A0A140IL90.1
NorRed1 6876 1049 810 noroxomaritidine/norcraugsodine reductase Narcissus aff. pseudonarcissus 2 × 10−169 AOP04255.1
NorRed2 6876 1049 780 noroxomaritidine/norcraugsodine reductase Narcissus aff. pseudonarcissus 1 × 10−164 AOP04255.1
NorRed3 6876 1049 768 noroxomaritidine/norcraugsodine reductase Narcissus aff. pseudonarcissus 3 × 10−173 AOP04255.1
Histone 9658 437 410 histone H3.3 Arabidopsis thaliana 3 × 10−95 P59169.2