Table 1.
Nanoplot statistics for the MinIT base-calling output and post MinION Detection Software (MINDS) statistics for the Centrifuge analysis. The average multi-classified read mapped to 2.53 species (Centrifuge multi-classified reads count/Actual MinION reads that Centrifuge multi-classified).
| Mean Read Length | 2268 bp |
| Mean read quality | 9.6 |
| Medium read length | 1344 bb |
| Median read quality | 9.7 |
| Number of reads | 173,440 bp |
| Read length N50 | 4275 bp |
| Total bases | 393,502,204 bp |
| Reads above quality cutoffs > Q5 | 173,440 (100%) |
| Reads above quality cutoffs > Q7 | 173,440 (100%) |
| Reads above quality cutoffs > Q10 | 68,766 (39.6%) |
| Reads above quality cutoffs > Q12 | 1344 (0.8%) |
| Reads above quality cutoffs > Q12 | 0 (0%) |
| Number of reads mapped by Centrifuge | 184,795 |
| Unclassified reads by Centrifuge | 5611 |
| Centrifuge total reads count | 179,184 |
| Centrifuge unique reads count | 160,396 |
| Centrifuge multi-classified reads count | 18,788 |
| Actual MinION reads that Centrifuge multi-classified | 7433 |