Table 3.

Summary of read data for the results of Canu.

Result		1st	2nd	3rd	Combined
Total loaded reads	No. of reads	119,022	649,003	127,653	895,678
	Total length (bp)	1,495,987,647	6,216,312,936	1,767,114,081	9,479,414,664
	Coverage	2.04	8.51	2.42	12.63
Expected corrected reads	No. of reads	117,932	647,151	125,836	893,520
	Total length (bp)	1,333,102,902	6,187,551,664	1,359,065,630	8,029,184,425
	Mean read length (bp)	11,304	7,900	10,800	8,986
	N50 length (bp)	49,358	23,337	53,805	72,703
After correction/Before trimming	No. of reads	110,540	607,805	116,100	845,774
	Total length (bp)	1,235,198,760	5,658,532,542	1,549,842,529	8,673,782,926
	Coverage	1.68	7.75	2.12	11.56
After trimming a	No. of reads	68,176	403,755	56,719	566,533
	Total bases (bp)	411,454,770	2,794,594,634	376,245,841	4,739,533,665
UniTigging/READs	No. of reads	68,176	410,746	56,719	577,103
	Total length (bp)	424,463,809	2,844,670,276	381,679,172	4,833,385,452
	Coverage	0.58	3.89	0.52	6.44
UniTigging/concensus	No. of sequences	159	5,740	127	6,124
	No. of repeats	28	692	26	712
	Length of repeats (bp)	573,105	10,509,344	472,695	14,815,759
	Total length (bp)	3,088,777	178,246,454	3,256,717	344,366,012
	Coverage	0.004	0.237	0.004	0.459
Unassembled	No. of sequences	38,897	168,888	32,340	216,120
	Total length (bp)	259,436,098	1,180,881,063	252,418,869	1,832,920,246

^a Trimmed reads output.