Figure 3: Spatial pattern emerges within visceral endoderm at onset of post-implantation development (E5.5).
Results from Harmony applied to replicates of E3.5-E8.75 (excluding ParE). a, Force directed layout of endoderm cells from blastocyst-to-midgestation. b, Palantir pseudo-time, DP and BP of endoderm cells using a Nanoghi start cell. c, Heatmap of genes expressed (Extended Fig. 9h) in exVE or emVE at E5.5. Cells sorted within each compartment by pseudo-time ordering.