Table 1. Parameter values and initial conditions of the 2D model.
Parameter | Description | Value in 2d model |
---|---|---|
V | Cell volume | 200 × 200 a.u. |
IP3 dynamics | ||
IP0 | Initial IP3 number/conc. | 15 molec. |
DIP3 | IP3 diffusion | 10 a.u |
Nplc | PLCδ number/conc. | 1000 molec. |
δ | PLCδ max rate | 0.1 a.u |
β | IP3 decay | 0.01 a.u |
Ca2+ dynamics | ||
Ca0 | Initial Ca2+ number/conc. | 50 molec. |
DCa | Ca2+ diffusion | varied |
μ | Ca2+ flux through open IP3R | 50 a.u |
γ | cytosolic Ca2+ influx | 50 a.u |
α | Ca2+ decay rate | 1.0 a.u |
IP3R | ||
IP3R number | 1000 molec. | |
IP3R interact. distance | 1 space unit | |
IP3R binding | ||
a1 | First Ca | 1.0 a.u |
a2 | IP3 | 1.0 a.u |
a3 | Second Ca | 0.1 a.u |
IP3R dissociation | ||
b1 | First Ca | 0.1 a.u |
b2 | IP3 | 0.1 a.u |
b3 | Second Ca | 0.1 a.u |