Table 1. The modeling validation assays using different online web-servers .
Methods | Assay scheme | Score | Range |
ProSA-web | Modeling verification by calculating an overall quality Z-score | - 3.45 | NPS* |
ERRAT (%) | The overall quality for non-bounded atomic interactions | 91.65 | >50% |
VERIFY3D (%) | The number of residues having an average 3D/1D score above 2.0 | 72.00 | >80% |
RAMPAGE (%) | The residues within the allowed region in psi/phi Ramachandran plot | 98.60 | >90% |
* Native protein size (NPS): This criterion checks the z-score of the target structure whether is within the range of scores typically identified for the native proteins of similar size.