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. 2019 Mar 8;9(3):145–159. doi: 10.15171/bi.2019.19

Table 3. The list of top 10 hubs obtained by employing the nine different types of scoring algorithms of CytoHubba plugin .

Rank Scoring method Consensus a
Betweenness MNC Bottleneck Radiality EcCentricity MCC Stress Closeness Degree
1 HIF-1α HIF1- α HIF-1α HIF-1α TSGA10 VEGFA HSP90AA1 HIF-1α HIF-1α HIF-1α
2 HSP90AA1 VEGFA VEGFA VEGFA TEKT3 HIF-1α HIF-1α VEGFA VEGFA VEGFA
3 TSGA10 ARNT HSP90AA1 ARNT LOC81691 TP53 AKT1 ARNT ARNT HSP90AA1
4 AKT1 AKT1 TSGA10 HSP90AA1 SPAG6 AKT1 VEGFA HSP90AA1 HSP90AA1 AKT1
5 ARNT HSP90AA1 APP AKT1 TUBA3C JUN ARNT AKT1 AKT1 ARNT
6 VEGFA TP53 TP53 TP53 BACE1 EP300 TSGA10 TP53 TP53 TP53
7 TUPA3C VHL SPAG6 JUN HIF-1α EGFR APP VHL VHL TSGA10
8 SPAG6 JUN TUBB4B EGFR CXCR4 CDKN1A VHL JUN JUN VHL
9 APP EGFR AKT1 VHL ADM MDM2 NOTCH1 EGFR EGFR JUN
10 VHL EPO FLT1 EP300 BHLHE41 HSP90AA1 TP53 EP300 EPO EGFR

MNC: maximum neighborhood component; MCC: maximal clique centrality.

a The final consensus protein hubs are ranked as 1 (as the highest) to 10 (the lowest).