Table 3. The list of top 10 hubs obtained by employing the nine different types of scoring algorithms of CytoHubba plugin .
Rank | Scoring method | Consensus a | ||||||||
Betweenness | MNC | Bottleneck | Radiality | EcCentricity | MCC | Stress | Closeness | Degree | ||
1 | HIF-1α | HIF1- α | HIF-1α | HIF-1α | TSGA10 | VEGFA | HSP90AA1 | HIF-1α | HIF-1α | HIF-1α |
2 | HSP90AA1 | VEGFA | VEGFA | VEGFA | TEKT3 | HIF-1α | HIF-1α | VEGFA | VEGFA | VEGFA |
3 | TSGA10 | ARNT | HSP90AA1 | ARNT | LOC81691 | TP53 | AKT1 | ARNT | ARNT | HSP90AA1 |
4 | AKT1 | AKT1 | TSGA10 | HSP90AA1 | SPAG6 | AKT1 | VEGFA | HSP90AA1 | HSP90AA1 | AKT1 |
5 | ARNT | HSP90AA1 | APP | AKT1 | TUBA3C | JUN | ARNT | AKT1 | AKT1 | ARNT |
6 | VEGFA | TP53 | TP53 | TP53 | BACE1 | EP300 | TSGA10 | TP53 | TP53 | TP53 |
7 | TUPA3C | VHL | SPAG6 | JUN | HIF-1α | EGFR | APP | VHL | VHL | TSGA10 |
8 | SPAG6 | JUN | TUBB4B | EGFR | CXCR4 | CDKN1A | VHL | JUN | JUN | VHL |
9 | APP | EGFR | AKT1 | VHL | ADM | MDM2 | NOTCH1 | EGFR | EGFR | JUN |
10 | VHL | EPO | FLT1 | EP300 | BHLHE41 | HSP90AA1 | TP53 | EP300 | EPO | EGFR |
MNC: maximum neighborhood component; MCC: maximal clique centrality.
a The final consensus protein hubs are ranked as 1 (as the highest) to 10 (the lowest).