. 2019 Sep 5;19:316. doi: 10.1186/s12887-019-1690-5

Table 3.

Twelve isolates were analyzed by WGS. The 12 isolates consisted of seven non-typeable isolates and five MDR defined isolates

Isolate number	MLST type (ST)^a	Clonal complex (CC)/ nearest ST	Genotype/Capsular locus top hit (Nearest match)	Serotype	Pen/Tetra/SXT/Ery (Phenotypical)	tet(M)	ermB	PBP 1a	PBP 2b	PBP 2x	Predicted value*/Phenotype value
G10	(2–5–36-12-2-21-?)	ST908/ST11041	Top hit: Genotype 38	NT	I/S/R/S	–	–	38	25	43	MIC =? / MIC = 1
C131	(2–5–36-12-2-21-?)	ST908/ST11041	Top hit: Genotype 38	NT	I/S/R/S	+ (Tn916)	–	38	25	43	MIC =? / MIC = 2
C28	(2–5–36-12-2-21-?)	ST908/ST11041	Top hit: Genotype 38	NT	I/S/R/S	+ (Tn916)	–	38	25	43	MIC =? / MIC = 2
G11	344	Singleton	Top hit: Genotype 38	NT	I/R/R/S	+ (0)^c	–	55	16	150	MIC =? / MIC = 0.12
C139	(2–149–1-12-6-494-14)	ST11264	Top hit: Genotype 14	NT	S/R/I/S	+ (Tn916)	–	24	73	192	MIC =? / Oxa sentitive
C140	9735	CC63	Top hit: Genotype 14	NT	S/R/R/S	+ (Tn916)	–	24	73	192	MIC =?/Oxa sentitive
G7	(2–37–36-29-17-21-14)	ST9735	Top hit: Genotype 14	NT	I/R/R/S	+ (Tn916)	–	24	73	192	MIC =? / MIC = 0.12
D012	2613	Singleton	Genotype 15A	15A	I/R/S/R	+ (Tn916)	+ (0)^c	34	89	147	MIC = 2/ MIC = 2
G14	320	CC320	Genotype 19A	19A	I/R/R/R	+ (0)^c	+ (0)^c	13	11	16	MIC = 4/ MIC = 1
G27	320	CC320	Genotype 19A	19A	I/R/R/R	+ (0)^c	–	13	11	16	MIC = 4/ MIC = 1
G28	320	CC320	Genotype 19A	19A	I/I/I/R	+ (0)^c	+ (0)^c	13	11	16	MIC = 4/ MIC = 1
C88	320	CC320	Genotype 19A	19A	I/R/R/R	+ (0)^c	+ (0)^c	13	11	16	MIC = 4/ MIC = 1

^aThe MLST locus allele is presented as (aroE-gdh-gki-recP-spi-xpt-ddl)

* Predicted level of resistance to penicillin according to CDC (https://www.cdc.gov/streplab/pneumococcus/mic.html)