Table 2.
Set of A. thaliana genes significantly differentially expressed in response to B16 or B17 treatment in plate-grown Col-0 seedlings
| Treatment | Enriched GO termsa | NumDEInCat | NumInCat | P value |
|---|---|---|---|---|
| B16–12 | Protein targeting to membrane (GO:0006612) | 40 | 364 | 3.55E-11 |
| Regulation of plant-type hypersensitive response (GO:0010363) | 40 | 366 | 3.55E-11 | |
| Response to abscisic acid (GO:0009737) | 43 | 450 | 3.12E-10 | |
| Response to ethylene (GO:0009723) | 30 | 253 | 3.49E-09 | |
| Response to jasmonic acid (GO:0009753) | 26 | 262 | 2.35E-06 | |
| Response to oxidative stress (GO:0006979) | 21 | 181 | 3.76E-06 | |
| Systemic acquired resistance (GO:0009627) | 23 | 243 | 2.83E-05 | |
| B17–12 | Response to ethylene (GO:0009723) | 30 | 253 | 2.72E-14 |
| Regulation of plant-type hypersensitive response (GO:0010363) | 33 | 366 | 7.93E-13 | |
| Systemic acquired resistance (GO:0009627) | 27 | 243 | 1.54E-12 | |
| Defense response to fungus (GO:0050832) | 30 | 314 | 1.75E-12 | |
| Response to jasmonic acid (GO:0009753) | 26 | 262 | 3.76E-11 | |
| Salicylic acid biosynthetic process (GO:0009697) | 23 | 208 | 7.49E-11 | |
| Systemic acquired resistance, salicylic acid mediated signalling pathway (GO:0009862) | 25 | 251 | 7.49E-11 | |
| Response to chitin (GO:0010200) | 31 | 420 | 3.19E-10 | |
| Jasmonic acid mediated signalling pathway (GO:0009867) | 25 | 275 | 4.91E-10 | |
| Defence response to bacterium (GO:0042742) | 28 | 359 | 9.09E-10 | |
| B16–24 | Generation of precursor metabolites and energy (GO:0006091) | 15 | 67 | 2.73E-17 |
| DNA-templated transcription, elongation (GO:0006354) | 15 | 124 | 2.38E-13 | |
| Photosynthesis (GO:0015979) | 17 | 189 | 2.38E-13 | |
| Translation (GO:0006412) | 11 | 364 | 0.002746 | |
| B17–24 | Generation of precursor metabolites and energy (GO:0006091) | 7 | 67 | 1.14E-06 |
| Photosynthesis (GO:0015979) | 9 | 189 | 1.96E-06 | |
| DNA-templated transcription, elongation (GO:0006354) | 7 | 124 | 2.92E-05 | |
| Systemic acquired resistance, salicylic acid mediated signalling pathway (GO:0009862) | 8 | 251 | 0.000184 | |
| Regulation of hydrogen peroxide metabolic process (GO:0010310) | 7 | 183 | 0.000250 | |
| Response to bacterium (GO:0009617) | 6 | 172 | 0.002197 |
aListed are the biological functions of the significantly enriched GO terms based on the Gene Ontology database (http://www.geneontology.org/)