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. 2019 Jul 30;59(8):3370–3388. doi: 10.1021/acs.jcim.9b00237

Table 1. Atom Featuresa.

feature description size
atom type type of atom (ex. C, N, O), by atomic number 100
# bonds number of bonds the atom is involved in 6
formal charge integer electronic charge assigned to atom 5
chirality unspecified, tetrahedral CW/CCW, or other 4
# Hs number of bonded hydrogen atoms 5
hybridization sp, sp2, sp3, sp3d, or sp3d2 5
aromaticity whether this atom is part of an aromatic system 1
atomic mass mass of the atom, divided by 100 1
a

All features are one-hot encodings except for atomic mass, which is a real number scaled to be on the same order of magnitude.