Table 1. Atom Featuresa.
| feature | description | size |
|---|---|---|
| atom type | type of atom (ex. C, N, O), by atomic number | 100 |
| # bonds | number of bonds the atom is involved in | 6 |
| formal charge | integer electronic charge assigned to atom | 5 |
| chirality | unspecified, tetrahedral CW/CCW, or other | 4 |
| # Hs | number of bonded hydrogen atoms | 5 |
| hybridization | sp, sp2, sp3, sp3d, or sp3d2 | 5 |
| aromaticity | whether this atom is part of an aromatic system | 1 |
| atomic mass | mass of the atom, divided by 100 | 1 |
All features are one-hot encodings except for atomic mass, which is a real number scaled to be on the same order of magnitude.