Table 1. Primers used for the RT-LAMP assay for VT strains of Citrus tristeza virus.
Primer name | Sequence (5'-3') | Primer position (nt)a | Primer length (bp) |
---|---|---|---|
VT_F3 | CGTACCCTCCGGAAATTACG | 19–38 | 20 |
VT_B3 | GGTGGTTGTTTCAGTACCGA | 217–236 | 20 |
VT_FIP (F1c + F2) | AGCGAGCTCCAAGTTTCGACAT-TGCGGGAATTGGTGTAGGT | (108–129)-(48–66) | 22–19 |
VT_BIP (B1c + B2) | GGTCCTCGACTTTCGCTGTACG-AGTGCAGGACTCCAACGG | (133–154)-(196–213) | 22–18 |
VT_LF | GGCGTAGTGGGCAATTTGC | 71–89 | 19 |
VT_LB | TTACGTCATCTCGCGCATCT | 161–180 | 20 |
aThe primer position numbers are based on CA-VT-AT39 CTV strain.