TABLE 1.
Summary statistics of assembly and annotation of G. magnicellulatus
| Parameter | Value |
|---|---|
| Assembly | |
| Genome size (Mb) | 129.9 |
| Avg coverage (×) (no. of Illumina reads)a | 46 (97) |
| Avg coverage (×) (no. of Nanopore reads)a | 4 (60) |
| No. of contigs | 84,604 |
| N50 (bp) | 4,118 |
| Longest scaffold (kbp) | 197 |
| GC content (%) | 44 |
| BUSCOb (% recovered) | 88.2 |
| Annotation | |
| Total no. of protein-coding genes | 8,172 |
| Avg gene length (bp) | 1,764 |
| No. of coding sequencesc | 8 |
| No. of repeat sequencesc | 40 |
| No. of proteins with at least one Pfam domaind | 6,396 |
| No. of secreted proteinse | 304 |
a
Percentage of reference bases covered, estimated using BBMap v.37.93 (6).
b
Sordariomyceta data set.
c
Percent assembly size.
d
Identified using InterProScan v.5.25-64 (15).
e
Identified using SignalP-5.0 (16) and TMHMM v.2.0 (http://www.cbs.dtu.dk/services/TMHMM/) to exclude transmembrane proteins.