Table 1.

Summary of hypothesis testing results for the six gene families tested

Dataset	Tree	logL	p-WKH	p-WSH	p-AU
D27	Phylobayes_tree_AA	− 29,047.235	0.0037	0.0056	0.0024
D27	Raxml_tree_AA	− 29,033.177	0.0181	0.0351	0.017
D27	IQ_tree_Nucl	− 28,989.821	0.9819	0.9901	0.9872
LBO	Phylobayes_tree_AA	− 14,392.989	0.0619	0.104	0.0339
LBO	Raxml_tree_AA	− 14,384.488	0.938	0.997	0.971
LBO	IQ_tree_Nucl	− 14,454.098	0.0008	0.0009	0.000624
MAX1	Phylobayes_tree_AA	− 11,620.825	0.0033	0.0062	0.0007
MAX1	Raxml_tree_AA	− 11,556.029	0.8381	0.9544	0.848
MAX1	IQ_tree_Nucl	− 11,570.886	0.1619	0.2706	0.1579
CCD7	Phylobayes_tree_AA	− 15,752.52	0.1431	0.2475	0.16
CCD7	Raxml_tree_AA	− 15,742.717	0.8569	0.9674	0.9133
CCD7	IQ_tree_Nucl	− 15,785.588	0.0353	0.047	0.0359
CCD8	Phylobayes_tree_AA	− 11,524.537	0.0427	0.0642	0.0205
CCD8	Raxml_tree_AA	− 11,514.983	0.957	0.998	0.981
CCD8	IQ_tree_Nucl	− 11,621.601	0.0013	0.0015	0.0000293
SMXL	Phylobayes_tree_AA	− 62,476.375	0.0058	0.0106	0.0077
SMXL	Raxml_tree_AA	− 62,393.986	0.9942	0.9992	0.9923
SMXL	RAxML_tree_Nucl	− 62,710.892	0	0	0

Loglikelihood (logL) per topology, as well as p value for weighted KH test (p-WKH); p value for weighted SH test (p-WSH) and p value for the Approximately Unbiased test (p-AU) as calculated in IQ-tree. Highlighted in grey are the non-rejected hypotheses. See the ‘Materials and methods’ section for further details