Table 1.

Primers used for complete genome sequencing of D51 strain

Primer		Sequence	Localization (in the polyprotein gene)	Fragment length (bp)
1F		CCGAA(G/A)TGGGCGAGTC	1–918	919
1R		CCAGGTGTCAACAATCATGC
2F		GATGTTTATGGTGAGTTGTACAC(A/T)G	806–1786	972
2R		GCTAGATGGTATTATGCCTCTTG
3F		TTGCAGCTCACTCTGGCATA	1567–2231	666
3R		TGATGTCACTCCCTGTGAA(G/C)C
4F		CTCGCGAAAGAAGTTAAGAGTG	2021–2989	971
4R		CCTTCTTCATCGATGTCATTATCC
5F		CAGAGAATGCTTGATGAAGG(C/T)	2879–4177	1297
5R		TT(T/A)GGATACGCTGGTGTTGA
6F		CTTGGACTGTGGAAGCATATACC	3977–4740	763
6R		GTTGAAAACTGCCCTGAAGG
7F		GTTACCAACTGGAGAAGTCTGTCA	4680–5582	903
7R		TCCAAGTGTGACCACTGTTGTC
8F		GACAACAGTGGTCACACTTGGA	5561–6619	1082
8R		CCATGTGTGGTGTATATTGTGAT(G/A)
9F		GAGGTGTTCTGGGCAGTTTCAA	6291–7403	1113
9R		CTCCATCATCATCCTCTCACACTG
10F		AGTGTGAGAGGATGATGATGGA	7381–7620	240
10R		TGTGACCCACATGGTGATTTC
3′ Race	P1	AGTGTGAGAGGATGATGATGGA	7381–7751	371
	Race1	GACTCGAGTCGACATCGA(T)18
	P2	ACAGCTGCACTTTCTCATGC	7516–7751	236
	Race2	GACTCGAGTCGACATCGA