TABLE 10.
AAC(6′)Ib-cr variants with demonstrated quinolone-acetylating activitya
GenBank accession no. | IDb | Size (no. of amino acids) | Amino acid positionc | Quinolone(s)d | Reference | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WP_001749987 | cr5 | 199 | M1 | S2 | N3 | A4 | K5 | N20 | R102 | L117 | Y179 | D198 | CIP, NOR, TSX | 170 |
EUM72348 | 202 | I | Q | H | F | Q | D | V | CIP | 406 | ||||
—e | ? | ? | ? | ? | ? | ? | G | ? | CIP | 406 | ||||
EUM72320 | 199 | W | CIP, GMX, ZBX | 406 | ||||||||||
WP_015059932 | cr4 | 225 | T | P | G | N | D | T | CIP, NOR | 409 |
CIP, ciprofloxacin; GMX, gemifloxacin; NOR, norfloxacin; TSX, tosufloxacin; ZBX, zabofloxacin. Amino acids considered relevant for the acetylation of quinolones are highlighted in boldface type. Note that possible enhanced or diminished activity as well as expanded or contracted substrate profile alterations might be related to nonhighlighted amino acid differences. The absence of a specific quinolone does not preclude the inability of the enzyme to inactive it.
In the description present in GenBank, note that the first described AAC(6′)Ib-cr enzyme (170) is numbered “cr5.”
Following the numeration provided by Robicsek et al. (170), note that the different sizes of acetylases may lead to different numeric positions in any variant. For instance, the reported amino acid substitution “N20T” under GenBank accession number WP_015059932 is located in the equivalent position 46. When longer, amino acid positions prior to M1 under GenBank accession number WP_001749987 have not been analyzed.
Quinolones which might be acetylated.
No GenBank accession number is provided in the article by Kim et al. (406), and after a search in GenBank using the sequence under accession number WP_001749987 and introducing a glycine in position 179, no concordant enzyme was found among the first 100 results.