TABLE 11.
Amino acid changes described in transferable OqxAa
Yrc | GenBank accession no.b |
% identityd | Amino acid difference | Gram-negative genus or generae | Referencef | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DNA | Amino acid | |||||||||||||||||
2007 | EU370913g | AAP43109 | 100.0 | G8 | G16 | M19 | S30 | A113 | R116 | I159 | S183 | A199 | Q244 | R338 | D339 | ins | Enterobacter, Escherichia, Salmonella, Shigella | 156 |
2012 | NG_050420 | WP_063865358 | 99.7 | V | Escherichia, Raoultella, Salmonella, Enterococcus | 177 | ||||||||||||
2016 | NZ_LVMD01000084 | WP_063501637 | 99.7 | S | Escherichia | |||||||||||||
2016 | KT727030 | AMW92379 | 99.7 | R | Enterococcus | |||||||||||||
2018 | CP029215 | AWJ07841 | 99.7 | E | Escherichia | |||||||||||||
2018 | CP026492 | AUY47426 | 99.7 | I | Escherichia | |||||||||||||
2018 | KT716392 | AMW92376 | 99.7 | H | Enterococcus | |||||||||||||
2016 | FLWH01000008 | SBY67709 | 99.5 | E | V | Escherichia | ||||||||||||
2017 | NZ_MKFO01000039 | WP_089069082 | 99.5 | E | V | Escherichia | ||||||||||||
2017 | MOGH01000057 | OJM31094 | 99.5 | V | R | Escherichia | 56 | |||||||||||
2018 | JAMW01000061 | OXY63391 | 99.5 | K | V | Salmonella | ||||||||||||
2018 | MG028668 | AWG41968 | 99.5 | V | T | Enterobacter | ||||||||||||
2018 | MG028669 | AWG41969 | 99.5 | V | C | Enterobacter | ||||||||||||
2018 | PTMN01000089 | PPW02434 | 99.2 | 41PAP | Escherichia |
Gram-positive microorganisms are highlighted in boldface type. No allelic numeration has been included to avoid confusion with a series of K. pneumoniae chromosomal OqxA proteins that are present in GenBank with an assigned allelic numeration. Note that these variants may be present in other genera and that other OqxA variants may remain undetected. ins, insertion.
In several cases, multiple valid DNA/amino acid sequences may be found in GenBank.
Date of first published report. If no published report has been found, the data for the older GenBank record are reported.
The minimum degree of identity considered was 99%. A series of OqxAB efflux pumps with lower levels of identity are present in GenBank, including a transferable oqxAB gene probably derived from an ancestral K. aerogenes isolate (GenBank accession number NZ_BGTY01000006) (see “OqxAB”).
In all cases, it is considered that any OqxA reported in a microorganism other than Klebsiella spp. belongs to a transferable gene, irrespective of chromosomal/plasmid location or the absence of specific genetic environment data. The presence of transferable OqxA in Klebsiella spp. is not reported here.
First published report.
First OqxA described as a transferable determinant.