(A) Incorporation of AP4A during transcription initiation. E. coli RNA polymerase was used to synthesize yeiP RNA by in vitro transcription in the presence or absence of a substantial excess of Ap4A, and the products were examined by boronate gel electrophoresis, with or without prior decapping by RppH (PPase). See also Fig. S6A.
(B) Post-transcriptional capping by lysyl-tRNA synthetase. Triphosphorylated yeiP RNA was treated with purified E. coli LysU in the presence of ATP and lysine, and the reaction products were examined by boronate gel electrophoresis, with or without prior decapping by RppH (PPase). See also Fig. S6B.