Table 1.
Amino Acid Interactions |
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Ca2+ Interactions | Class 5TAQ (Closed) Distance, Å | Class 5TAL (Open) Distance, Å | Class 5TAQ (Closed) | Distance, Å | Class 5TAL (Open) | Distance, Å | Type |
WT variant | |||||||
E3893(OE1) | 2.4 | 2.3 | H3895(ND1) - Q3970(O) | 3.0 | H3895(ND1) - Q3970(O) | 3.0 | Attractive |
E3893(OE2) | 2.1 | 2.2 | H3895(N) - E3893(O) | 3.5 | H3895(N) - E3893(O) | 3.5 | Attractive |
E3893(O) | 3.8 | Q3970(OE1) - E3967(OE1) | 3.3 | Repulsive | |||
E3967(OE1) | 2.5 | 2.4 | |||||
E3967(OE2) | 2.2 | 2.3 | |||||
T5001(O) | 2.6 | 2.5 | |||||
Q3970E variant | |||||||
E3893(OE1) | 2.4 | 2.3 | H3895(ND1) - E3970(O) | 3.0 | H3895(ND1) - E3970(O) | 3.0 | Attractive |
E3893(OE2) | 2.1 | 2.2 | H3895(N) - E3893(O) | 3.5 | H3895 (N) - E3893 (O) | 3.5 | Attractive |
E3893(O) | 3.8 | E3970(OE1) - E3967(OE1) | 3.3 | E3970(OE1) - E3967(OE1) | 3.0 | Repulsive | |
E3967(OE1) | 2.5 | 2.4 | |||||
E3967(OE2) | 2.2 | 2.3 | |||||
T5001(O) | 2.6 | 2.5 | |||||
Q3970K variant | |||||||
E3893(OE1) | 2.4 | 2.3 | K3970(NZ) - T3966(OG1) | 3.9 | K3970(NZ) - T3966(OG1) | 3.8 | Attractive |
E3893(OE2) | 2.1 | 2.2 | K3970(NZ) - E3967(OE2) | 2.9 | K3970(NZ) - E3967(OE2) | 2.6 | Attractive |
E3893(O) | 3.8 | K3970(O) - H3895(ND1) | 3.0 | K3970(O) - H3895(ND1) | 3.0 | Attractive | |
E3967(OE1) | 2.5 | 2.4 | H3895(N) - E3893(O) | 3.5 | H3895(N) - E3893(O) | 3.5 | Attractive |
E3967(OE2) | 2.2 | 2.3 | |||||
T5001(O) | 2.6 | 2.5 |
Strong electrostatic interactions (distance <3.5Å) are shown in Fig. 5 as blue dashed lines and weak electrostatic interactions (distance >3.5Å) are shown as red dashed lines between Ca2+ and type 1 ryanodine receptor (RyR1) residues. Distances less than 3.5Å formed between inter-residues in RyR1-Q3970K are shown as blue dashed lines; repulsive interactions are shown as green dotted lines. WT, wild type.