Table 2.
CpG | Estimate | SE | P-value | Chr | Position (bp) | Gene | Distance to gene (bp) | Gene—CGI feature | |
---|---|---|---|---|---|---|---|---|---|
(A) Individual level analysis | cg14304073 | − 0.0029 | 0.0006 | 2.53E−06 | 14 | 91,691,190 | DGLUCY | 0 | 3′UTR—open sea |
cg16411857 | 0.0068 | 0.0015 | 5.87E−06 | 16 | 57,023,191 | NLRC5 | 0 | TSS1500—island | |
cg14057711 | − 0.0083 | 0.0018 | 6.71E−06 | 17 | 22,203,489 | MTRNR2L1 | − 179,498 | IGR—open sea | |
cg13469425 | 0.0113 | 0.0025 | 7.39E−06 | 4 | 48,175,353 | TEC | 0 | Body—open sea | |
cg03398865 | − 0.0058 | 0.0013 | 9.20E−06 | 5 | 1,879,554 | IRX4 | 0 | Body—shore | |
(B) Intra-pair analysis all | cg01763947 | 0.0160 | 0.0032 | 1.09E−06 | 15 | 92,459,894 | SLCO3A1 | 0 | Body—shore |
cg11680027 | 0.0123 | 0.0026 | 2.76E−06 | 6 | 63,921,394 | LGSN | 64,462 | IGR—open sea | |
cg14140691 | 0.0100 | 0.0022 | 4.97E−06 | 9 | 141,012,312 | CACNA1B | 0 | Body—shelf | |
cg18809570 | 0.0116 | 0.0025 | 5.25E−06 | 7 | 155,437,147 | RBM33 | 0 | TSS200—island | |
cg14187877 | 0.0253 | 0.0055 | 5.75E−06 | 4 | 16,679,554 | LDB2 | 0 | Body—open sea | |
(C) Intra-pair analysis top 50% discordant | cg01763947 | 0.0274 | 0.0055 | 1.47E−06 | 15 | 92,459,894 | SLCO3A1 | 0 | Body—shore |
cg06663068 | 0.0176 | 0.0036 | 2.11E−06 | 3 | 9,994,061 | PRRT3; PRRT3* | 0 | 1st Exon; 5′UTR—island | |
cg15549075 | 0.0140 | 0.0029 | 2.77E−06 | 2 | 46,098,874 | PRKCE | 0 | Body—open sea | |
cg27653831 | 0.0318 | 0.0067 | 4.26E−06 | 16 | 67,700,515 | C16orf86;ENKD1; ENKD1* | 0 | TSS1500; 5′UTR; 1stExon—island | |
cg01874084 | 0.0314 | 0.0066 | 4.86E−06 | 12 | 56,320,851 | WIBG | 0 | Body—island | |
cg05870108 | − 0.0466 | 0.0100 | 6.80E−06 | X | 106,749,745 | FRMPD3-AS1 | 6468 | IGR—shore | |
cg10314909 | − 0.0278 | 0.0060 | 7.46E−06 | 1 | 2,524,890 | MMEL1 | 0 | Body—shelf | |
(D) Longitudinal analysis (LSADT sample) | cg15245520 | 2.2127 | 0.4781 | 5.00E−06 | 21 | 47,411,200 | COL6A1 | 0 | Body—shelf |
cg04927341 | 1.4535 | 0.3190 | 6.96E−06 | 1 | 86,576,497 | COL24A1 | 0 | Body | |
cg09714181 | − 0.6239 | 0.1371 | 7.20E−06 | 5 | 126,853,350 | PRRC1 | 0 | 5′UTR;1stExon—island | |
cg20569588 | − 1.5613 | 0.3448 | 7.79E−06 | 1 | 55,267,285 | TTC22 | 0 | TSS1500;TSS1500—shore | |
cg17070108 | 2.1001 | 0.4649 | 8.22E−06 | 12 | 8,758,006 | AICDA | 0 | Body—island |
SE standard error, Chr chromosome, bp base pairs, CGI CpG island, UTR untranslated region, TSS transcription start site, IGR intergenic region (CpG is assigned to nearest gene)
*CpG holds different gene feature depending on transcript. Annotation is based on Build 37