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. 2019 Sep 9;20:192. doi: 10.1186/s13059-019-1802-4

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — a CUT&RUNTools visualization of an example region chr11:72767100-72767300. The top two tracks show the strand-specific cut frequency profiles. The third track is the signal pileup plot. The fourth track is the fragment plot, showing the location and start and end positions of each DNA fragment. Forward cut frequency refers to the end of R1 mate and reverse refers to the end of R2 mate, where the designation of R1 and R2 is based on whether the mate alignment contains the motif or the motif’s reverse complement. b A zoom-in view of the same region as a. The view contains an additional sequence view (1) and highlighting of HGATAA motif (2)