Table 5.

List of all significant GWAS signals on the different traits

BTA	Physical position (Mb)	Trait	Associated P-value	Number of significant SNP	Significant interval (Mb)	Level of significance1
1	110.27	Omasum, % of EBW	4.54 × 10−7	10	110.01–110.27	**
2	6.22	Intestines, % of EBW	3.78 × 10−7	13	5.51–6.22	**
2	6.22	Carcass, % of EBW	5.87 × 10−24	2	6.21–6.22	***
2	6.22	Digestive tract, % of EBW	6.08 × 10−7	20	5.30–6.22	**
2	6.22	Fifth quarter fat, % of EBW	1.00 × 10−10	5	5.59–6.22	***
2	6.22	Muscle, % of carcass	4.74 × 10−26	2	6.21–6.22	***
2	6.22	Fat, % of carcass	2.22 × 10−16	2	6.21–6.22	***
2	6.22	Leather, % of EBW	6.51 × 10−7	12	5.49–6.22	**
2	6.22	Liver, % of EBW	6.11 × 10−9	5	5.59–6.22	***
2	6.22	Fifth quarter, % of EBW	5.44 × 10−29	2	6.21–6.22	***
2	55.42	Heart, % of EBW	1.73 × 10−7	5	55.35–55.45	**
2	76.43	Rumen, % of EBW	9.70 × 10−7	9	75.91–76.95	**
3	30.59	Abomasum, % of EBW	1.28 × 10−6	5	30.59–30.71	**
4	88.83	Liver, % of EBW	1.18 × 10−6	52	88.12–89.91	**
7	70.95	Lungs, % of EBW	1.29 × 10−6	2	70.94–70.95	**
8	74.83	Leather, % of EBW	4.77 × 10−7	47	72.49–75.15	**
12	36.34	Fifth quarter, % of EBW	4.52 × 10−7	10	33.94–36.34	**
13	9.256	REI maize phase	1.92 × 10−6	6	8.25–10.20	**
13	27.01	Lungs, % of EBW	2.41 × 10−6	15	26.46–27.34	**
19	48.17	REI maize phase	4.51 × 10−7	71	42.26–48.20	**
20	69.80	Leather, % of EBW	3.66 × 10−7	9	69.69–69.93	**
22	24.59	Rumen, % of EBW	2.77 × 10−6	10	24.56–24.60	**
26	43.11	Intestines, % of EBW	1.09 × 10−6	2	43.10–43.11	**
28	25.43	REI maize phase	6.43 × 10−8	16	25.41–25.55	***
28	28.24	Intestines, % of EBW	7.77 × 10−7	13	28.24–28.37	**

¹*** corresponds to the genome-wide significance threshold and ** to the chromosome-wide significance threshold.