Table 7.

Area under PR curve for our CNN models, in which the training data from other cell lines were used to pre-train each cell line-specific CNN as described in Section 2.3.2

Training/test cell line	GM12878	HeLa-S3	HUVEC	IMR90	K562	NHEK
GM12878	0.88	0.64	0.79	0.54	0.39	0.83
HeLa-S3	0.63	0.90	0.77	0.53	0.41	0.83
HUVEC	0.64	0.80	0.90	0.50	0.42	0.87
IMR90	0.64	0.83	0.71	0.90	0.42	0.59
K562	0.37	0.64	0.77	0.51	0.90	0.82
NHEK	0.66	0.81	0.81	0.38	0.44	0.92