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. 2019 Jul 12;47(15):7825–7841. doi: 10.1093/nar/gkz603

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© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 3. — Comparison of ChIP-exo peak locations as identified by three different PDMs (maxPeak, GEM and MACE) and the ChIP-chip enriched regions identified by Ostrow et al. for Fkh2 in logarithmic phase on chromosome XVI. The horizontal green dotted line indicates the threshold for GEM and maxPeak; the horizontal blue dotted line indicates the threshold for MACE. All ChIP-exo peak locations with a SNR > (for GEM and maxPeak) and/or a P-value < 0.01 (MACE) are displayed. ChIP-exo target gene peaks are labeled as identified through the pipeline reported in Figure 2. When multiple gene names are comma-separated in one label, the peak location was within a window of 1000 bp upstream of all listed gene ORFs.

Inline graphic — Comparison of ChIP-exo peak locations as identified by three different PDMs (maxPeak, GEM and MACE) and the ChIP-chip enriched regions identified by Ostrow et al. for Fkh2 in logarithmic phase on chromosome XVI. The horizontal green dotted line indicates the threshold for GEM and maxPeak; the horizontal blue dotted line indicates the threshold for MACE. All ChIP-exo peak locations with a SNR > (for GEM and maxPeak) and/or a P-value < 0.01 (MACE) are displayed. ChIP-exo target gene peaks are labeled as identified through the pipeline reported in Figure 2. When multiple gene names are comma-separated in one label, the peak location was within a window of 1000 bp upstream of all listed gene ORFs.