Table 1:
Genome assembly and annotation statistics of the eastern yellow robin
| Parameter | Details | |
|---|---|---|
| Organism | Eopsaltria australis (eastern yellow robin) | |
| Isolate | EYR054 (sex = female; data type: Illumina standard paired-end and Nanopore long read) | |
| EYR056 (sex = female; data type: Illumina mate-pair ) | ||
| Bioproject | PRJNA476023 | |
| Biosample | SAMN09425179 (isolate EYR054) | |
| SAMN10581952 (isolate EYR056) | ||
| GenBank assembly accession | GCA_0,034,26825.1 (QKXG01) | |
| Assembled length | 1,228,344,903 bp | |
| Scaffold N50 | 987,278 bp | |
| Number of scaffolds | 20,702 | |
| Number of predicted protein-coding genes | 23,905 | |
| Repeat annotation (%) | ||
| LINEs | 39,888,415 bp (3.25) | |
| LTR elements | 85,519,635 (6.96) | |
| DNA elements | 6,416,492 (0.52) | |
| Unclassified repeats | 42,749,317 (3.48) | |
| Satellites | 1,967,923 (0.16) | |
| Simple repeats | 14,300,770 (1.16) | |
| Low complexity | 3,128,912 (0.25) | |
| BUSCO completeness (aves_odb9) | Whole genome | Predicted proteome |
| Complete BUSCO | 4,627 (94.2%) | 3,795 (77.2%) |
| Complete and single-copy BUSCO | 4,436 (90.3%) | 3,302 (67.2%) |
| Complete and duplicated BUSCO | 191 (3.9%) | 493 (10.0%) |
| Fragmented BUSCO | 163 (3.3%) | 590 (12.0%) |
| Missing BUSCO | 125 (2.5%) | 530 (10.8%) |
| Total BUSCO groups search | 4,915 | 4,915 |
LINE: long interspersed nuclear element; LTR: long terminal repeat.