Table 3.
Summary of variants in IO-2C genome vs six reference strains.
| A. ferrooxidans ATCC 23270 | A. ferrooxidans ATCC 53993 | A. ferrooxidans BY0502 | A. ferrooxidans HeI18 | A. ferrooxidans YQH1 | |
|---|---|---|---|---|---|
| Total reads | 8608053 | 8615233 | 8619333 | 8628253 | 8628509 |
| Properly mapped reads | 6888563 (80.02%) | 6783099 (78.73%) | 4715417 (54.71%) | 6816839 (79.01%) | 6827769 (79.13%) |
| Total reference bases | 2982397 | 2885038 | 2946256 | 3100878 | 3098413 |
| Mean base coverage | 444.4 | 450.0 | 182.8 | 415.3 | 417.2 |
| Raw FreeBayes variants | 76508 | 79627 | 108939 | 80295 | 81114 |
| High quality variants | 75061 | 77796 | 103486 | 78319 | 79045 |